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Mutant Information

Mutant Name	FN347-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN347-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5827449 C-T Hetero INTERGENIC
SBS Chr1 14426034 C-T Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 22234497 C-A Hetero INTERGENIC
SBS Chr2 22234498 T-A Hetero INTERGENIC
SBS Chr2 36846820 A-T Homo INTERGENIC
SBS Chr3 1451532 C-T Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 14297406 G-T Hetero UTR_5_PRIME
SBS Chr3 20581055 G-T Hetero INTERGENIC
SBS Chr3 28520158 A-G Homo INTERGENIC
SBS Chr3 28618520 C-T Homo INTERGENIC
SBS Chr4 5669570 G-A Hetero INTERGENIC
SBS Chr4 12552022 G-A Hetero INTERGENIC
SBS Chr4 17278293 T-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr5 19578827 A-T Hetero STOP_GAINED OsKitaake05g154700
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 23154597 G-A Hetero INTERGENIC
SBS Chr5 24973954 A-C Hetero INTERGENIC
SBS Chr5 28160727 C-A Hetero INTRON
SBS Chr6 11064292 G-C Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 29102064 T-A Hetero INTRON
SBS Chr7 9611062 G-T Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr7 21312570 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g176900
SBS Chr8 28571311 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 15068908 C-T Homo INTERGENIC
SBS Chr10 1077326 A-T Hetero INTRON
SBS Chr10 3461413 G-A Hetero INTERGENIC
SBS Chr10 10314844 T-A Hetero INTERGENIC
SBS Chr11 12970715 G-T Hetero INTERGENIC
SBS Chr11 24530741 T-A Hetero INTERGENIC
SBS Chr12 2430449 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g036950
SBS Chr12 10842414 A-G Homo INTRON
SBS Chr12 22985052 C-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2743352 2743353 1
Deletion Chr12 6646223 6646229 6
Deletion Chr1 6671687 6671689 2
Deletion Chr7 13919001 13939000 19999
Deletion Chr11 14052001 14120000 67999 2
Deletion Chr1 35698001 35707000 8999
Deletion Chr1 43781248 43781249 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14475430 14475433 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10416929 Chr4 32417662 OsKitaake10g060800
Translocation Chr10 10416931 Chr4 32419628 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5827449	C-T	Hetero	INTERGENIC
SBS	Chr1	14426034	C-T	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	22234497	C-A	Hetero	INTERGENIC
SBS	Chr2	22234498	T-A	Hetero	INTERGENIC
SBS	Chr2	36846820	A-T	Homo	INTERGENIC
SBS	Chr3	1451532	C-T	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	14297406	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	20581055	G-T	Hetero	INTERGENIC
SBS	Chr3	28520158	A-G	Homo	INTERGENIC
SBS	Chr3	28618520	C-T	Homo	INTERGENIC
SBS	Chr4	5669570	G-A	Hetero	INTERGENIC
SBS	Chr4	12552022	G-A	Hetero	INTERGENIC
SBS	Chr4	17278293	T-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr5	19578827	A-T	Hetero	STOP_GAINED	OsKitaake05g154700
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	23154597	G-A	Hetero	INTERGENIC
SBS	Chr5	24973954	A-C	Hetero	INTERGENIC
SBS	Chr5	28160727	C-A	Hetero	INTRON
SBS	Chr6	11064292	G-C	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	29102064	T-A	Hetero	INTRON
SBS	Chr7	9611062	G-T	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr7	21312570	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g176900
SBS	Chr8	28571311	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	15068908	C-T	Homo	INTERGENIC
SBS	Chr10	1077326	A-T	Hetero	INTRON
SBS	Chr10	3461413	G-A	Hetero	INTERGENIC
SBS	Chr10	10314844	T-A	Hetero	INTERGENIC
SBS	Chr11	12970715	G-T	Hetero	INTERGENIC
SBS	Chr11	24530741	T-A	Hetero	INTERGENIC
SBS	Chr12	2430449	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g036950
SBS	Chr12	10842414	A-G	Homo	INTRON
SBS	Chr12	22985052	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2743352	2743353	1
Deletion	Chr12	6646223	6646229	6
Deletion	Chr1	6671687	6671689	2
Deletion	Chr7	13919001	13939000	19999
Deletion	Chr11	14052001	14120000	67999	2
Deletion	Chr1	35698001	35707000	8999
Deletion	Chr1	43781248	43781249	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10416929	Chr4	32417662	OsKitaake10g060800
Translocation	Chr10	10416931	Chr4	32419628	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes