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Mutant Information

Mutant Name	FN3470-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3470-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	43718797	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g486300
SBS	Chr2	18614859	T-G	Hetero	INTERGENIC
SBS	Chr2	18614860	A-T	Hetero	INTERGENIC
SBS	Chr2	19637592	A-T	Hetero	INTERGENIC
SBS	Chr2	23417399	G-A	Hetero	INTRON
SBS	Chr4	22934613	G-A	Hetero	INTERGENIC
SBS	Chr4	22934614	G-A	Hetero	INTERGENIC
SBS	Chr4	22934615	G-A	Hetero	INTERGENIC
SBS	Chr5	5853133	C-G	Hetero	INTERGENIC
SBS	Chr6	2574822	C-G	Hetero	INTRON
SBS	Chr7	500603	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g005100
SBS	Chr7	869733	G-A	Hetero	INTERGENIC
SBS	Chr7	869734	G-A	Hetero	INTERGENIC
SBS	Chr7	1694669	G-A	Hetero	INTERGENIC
SBS	Chr7	2165731	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	10828506	C-T	Hetero	INTERGENIC
SBS	Chr7	15100622	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g126400
SBS	Chr11	490533	G-A	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7484	7835	351
Deletion	Chr12	574573	574575	2
Deletion	Chr7	863373	863387	14
Deletion	Chr7	4271040	4271049	9
Deletion	Chr7	7509476	7509477	1
Deletion	Chr11	15580870	15580879	9
Deletion	Chr8	16189494	16189495	1
Deletion	Chr10	16772185	16772190	5
Deletion	Chr6	17216919	17216920	1
Deletion	Chr7	18523001	18597000	73999	5
Deletion	Chr6	20708467	20708470	3
Deletion	Chr4	20838522	20838525	3
Deletion	Chr11	24596315	24596322	7
Deletion	Chr8	26696001	26708000	11999	3

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr11	17598106	17598109	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	26660552	Chr2	33955505	OsKitaake08g214900
Translocation	Chr8	26696123	Chr2	33955504	OsKitaake08g215300