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| Mutant Information |
|---|
| Mutant Name | FN3471-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3471-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 38219236 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 7049325 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 7762986 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12249675 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12249676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18262705 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 19530033 | C-T | Homo | INTRON | |
| SBS | Chr5 | 10200199 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 10200200 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18018041 | T-C | Homo | INTRON | |
| SBS | Chr8 | 3875804 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g045001 |
| SBS | Chr9 | 7708344 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 16526181 | G-A | Homo | INTRON | |
| SBS | Chr10 | 4108108 | G-A | Homo | INTRON | |
| SBS | Chr10 | 16467068 | C-A | Homo | INTRON | |
| SBS | Chr11 | 5852200 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22740626 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 27767496 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11467021 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 9379793 | 9379804 | 11 | |
| Deletion | Chr9 | 9940585 | 9940586 | 1 | OsKitaake09g060400 |
| Deletion | Chr7 | 12608637 | 12608645 | 8 | |
| Deletion | Chr12 | 14066925 | 14066927 | 2 | |
| Deletion | Chr7 | 17840324 | 17840327 | 3 | |
| Deletion | Chr11 | 19497415 | 19497419 | 4 | |
| Deletion | Chr10 | 19626604 | 19626613 | 9 | |
| Deletion | Chr5 | 20154321 | 20154330 | 9 | |
| Deletion | Chr9 | 20423970 | 20423972 | 2 | |
| Deletion | Chr8 | 21461599 | 21461601 | 2 | |
| Deletion | Chr2 | 22814847 | 22814848 | 1 | |
| Deletion | Chr11 | 23890696 | 23890705 | 9 | |
| Deletion | Chr12 | 25721941 | 25721950 | 9 | |
| Deletion | Chr6 | 27975760 | 27975762 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 6869311 | 6869314 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 33944747 | 34110671 | OsKitaake03g366300 |
| Inversion | Chr3 | 33944884 | 34088190 | OsKitaake03g368200 |