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Mutant Information

Mutant Name	FN3472-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3472-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7560745 T-A Hetero INTERGENIC
SBS Chr1 7560746 T-A Hetero INTERGENIC
SBS Chr1 7560747 C-T Hetero INTERGENIC
SBS Chr1 9550286 C-A Hetero INTERGENIC
SBS Chr1 11682713 A-G Hetero INTERGENIC
SBS Chr1 14758348 G-A Hetero INTERGENIC
SBS Chr1 31574358 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g317200
SBS Chr1 33237772 A-G Homo INTERGENIC
SBS Chr1 33662385 G-A Homo UTR_5_PRIME
SBS Chr1 35969262 C-A Homo INTERGENIC
SBS Chr2 5812867 G-A Hetero INTRON
SBS Chr2 11809852 G-A Homo INTRON
SBS Chr3 1849563 T-C Hetero INTERGENIC
SBS Chr3 11332072 A-G Homo INTERGENIC
SBS Chr3 17660118 C-T Hetero INTERGENIC
SBS Chr3 19658758 G-A Hetero INTERGENIC
SBS Chr3 36593222 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g407200
SBS Chr4 3323676 C-G Hetero INTERGENIC
SBS Chr4 4492220 G-A Hetero INTERGENIC
SBS Chr4 5229119 G-T Hetero INTERGENIC
SBS Chr4 5230206 G-T Hetero INTERGENIC
SBS Chr4 12623618 C-T Hetero INTERGENIC
SBS Chr4 34363056 C-T Hetero INTERGENIC
SBS Chr5 9567838 T-A Homo INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 26565464 T-C Homo INTERGENIC
SBS Chr5 29628788 G-A Homo SYNONYMOUS_CODING
SBS Chr6 8811998 T-G Hetero INTERGENIC
SBS Chr6 13477137 G-A Homo INTERGENIC
SBS Chr6 14582061 G-A Homo INTERGENIC
SBS Chr6 22019441 C-T Homo INTERGENIC
SBS Chr6 24491292 C-T Hetero INTERGENIC
SBS Chr6 25928097 T-C Hetero INTRON
SBS Chr7 28577751 A-G Hetero INTERGENIC
SBS Chr7 29184600 G-C Hetero INTERGENIC
SBS Chr8 8194363 C-A Hetero INTERGENIC
SBS Chr8 22257977 T-A Hetero INTERGENIC
SBS Chr9 2979566 C-A Hetero INTERGENIC
SBS Chr10 5544105 T-C Hetero INTERGENIC
SBS Chr11 15786577 A-T Homo INTERGENIC
SBS Chr11 27627080 G-C Hetero INTRON
SBS Chr12 14182907 T-C Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3813001 4022000 208999 25
Deletion Chr12 4869001 4878000 8999 OsKitaake12g063000
Deletion Chr6 5573838 5573842 4
Deletion Chr10 6753024 6753038 14
Deletion Chr11 8834882 8834885 3
Deletion Chr9 10162013 10162015 2
Deletion Chr9 13398196 13398213 17
Deletion Chr4 13815448 13815453 5
Deletion Chr1 14955995 14956004 9 OsKitaake01g142200
Deletion Chr11 15790459 15790461 2
Deletion Chr2 16454237 16454244 7
Deletion Chr10 17551001 17565000 13999 OsKitaake10g120000
Deletion Chr3 17692409 17692422 13
Deletion Chr3 18315273 18315279 6
Deletion Chr10 19462812 19462816 4
Deletion Chr1 22717523 22717527 4 OsKitaake01g217100
Deletion Chr11 24548570 24548581 11 OsKitaake11g198000
Deletion Chr3 24620584 24620594 10
Deletion Chr12 25346771 25346788 17
Deletion Chr8 27317764 27317765 1
Deletion Chr4 33660321 33660323 2
Deletion Chr3 34699297 34699302 5
Deletion Chr1 41020921 41020922 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23549922 23549926 3
Insertion Chr4 577968 577971 2
Insertion Chr7 28331298 28331301 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 24815190 24856563 OsKitaake07g221300
Inversion Chr7 25013801 25020402 OsKitaake07g224300

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 8713123 Chr1 41453169 2
Translocation Chr3 8718456 Chr1 41453190 2
Translocation Chr5 14804026 Chr1 16780166 2
Translocation Chr5 14804371 Chr1 16780176 2
Translocation Chr9 20757388 Chr1 4361323
Translocation Chr9 20757722 Chr1 4361317

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7560745	T-A	Hetero	INTERGENIC
SBS	Chr1	7560746	T-A	Hetero	INTERGENIC
SBS	Chr1	7560747	C-T	Hetero	INTERGENIC
SBS	Chr1	9550286	C-A	Hetero	INTERGENIC
SBS	Chr1	11682713	A-G	Hetero	INTERGENIC
SBS	Chr1	14758348	G-A	Hetero	INTERGENIC
SBS	Chr1	31574358	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g317200
SBS	Chr1	33237772	A-G	Homo	INTERGENIC
SBS	Chr1	33662385	G-A	Homo	UTR_5_PRIME
SBS	Chr1	35969262	C-A	Homo	INTERGENIC
SBS	Chr2	5812867	G-A	Hetero	INTRON
SBS	Chr2	11809852	G-A	Homo	INTRON
SBS	Chr3	1849563	T-C	Hetero	INTERGENIC
SBS	Chr3	11332072	A-G	Homo	INTERGENIC
SBS	Chr3	17660118	C-T	Hetero	INTERGENIC
SBS	Chr3	19658758	G-A	Hetero	INTERGENIC
SBS	Chr3	36593222	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g407200
SBS	Chr4	3323676	C-G	Hetero	INTERGENIC
SBS	Chr4	4492220	G-A	Hetero	INTERGENIC
SBS	Chr4	5229119	G-T	Hetero	INTERGENIC
SBS	Chr4	5230206	G-T	Hetero	INTERGENIC
SBS	Chr4	12623618	C-T	Hetero	INTERGENIC
SBS	Chr4	34363056	C-T	Hetero	INTERGENIC
SBS	Chr5	9567838	T-A	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	26565464	T-C	Homo	INTERGENIC
SBS	Chr5	29628788	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	8811998	T-G	Hetero	INTERGENIC
SBS	Chr6	13477137	G-A	Homo	INTERGENIC
SBS	Chr6	14582061	G-A	Homo	INTERGENIC
SBS	Chr6	22019441	C-T	Homo	INTERGENIC
SBS	Chr6	24491292	C-T	Hetero	INTERGENIC
SBS	Chr6	25928097	T-C	Hetero	INTRON
SBS	Chr7	28577751	A-G	Hetero	INTERGENIC
SBS	Chr7	29184600	G-C	Hetero	INTERGENIC
SBS	Chr8	8194363	C-A	Hetero	INTERGENIC
SBS	Chr8	22257977	T-A	Hetero	INTERGENIC
SBS	Chr9	2979566	C-A	Hetero	INTERGENIC
SBS	Chr10	5544105	T-C	Hetero	INTERGENIC
SBS	Chr11	15786577	A-T	Homo	INTERGENIC
SBS	Chr11	27627080	G-C	Hetero	INTRON
SBS	Chr12	14182907	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3813001	4022000	208999	25
Deletion	Chr12	4869001	4878000	8999	OsKitaake12g063000
Deletion	Chr6	5573838	5573842	4
Deletion	Chr10	6753024	6753038	14
Deletion	Chr11	8834882	8834885	3
Deletion	Chr9	10162013	10162015	2
Deletion	Chr9	13398196	13398213	17
Deletion	Chr4	13815448	13815453	5
Deletion	Chr1	14955995	14956004	9	OsKitaake01g142200
Deletion	Chr11	15790459	15790461	2
Deletion	Chr2	16454237	16454244	7
Deletion	Chr10	17551001	17565000	13999	OsKitaake10g120000
Deletion	Chr3	17692409	17692422	13
Deletion	Chr3	18315273	18315279	6
Deletion	Chr10	19462812	19462816	4
Deletion	Chr1	22717523	22717527	4	OsKitaake01g217100
Deletion	Chr11	24548570	24548581	11	OsKitaake11g198000
Deletion	Chr3	24620584	24620594	10
Deletion	Chr12	25346771	25346788	17
Deletion	Chr8	27317764	27317765	1
Deletion	Chr4	33660321	33660323	2
Deletion	Chr3	34699297	34699302	5
Deletion	Chr1	41020921	41020922	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24815190	24856563	OsKitaake07g221300
Inversion	Chr7	25013801	25020402	OsKitaake07g224300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes