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Mutant Information

Mutant Name	FN3473-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3473-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12217095 A-T Hetero INTERGENIC
SBS Chr1 30254034 T-C Hetero INTRON
SBS Chr1 30254035 A-T Hetero INTRON
SBS Chr1 30257713 A-G Hetero INTERGENIC
SBS Chr1 30774096 C-T Hetero INTERGENIC
SBS Chr1 33717787 C-G Hetero INTRON
SBS Chr2 24523601 G-A Homo INTERGENIC
SBS Chr2 30762703 C-T Hetero INTERGENIC
SBS Chr3 8989453 A-G Hetero INTERGENIC
SBS Chr4 12320383 A-T Homo SPLICE_SITE_REGION
SBS Chr4 31081779 G-A Homo INTERGENIC
SBS Chr5 16313537 T-G Hetero INTERGENIC
SBS Chr5 19516694 A-G Hetero INTERGENIC
SBS Chr5 21751386 T-A Hetero INTERGENIC
SBS Chr6 8582415 T-C Homo INTRON
SBS Chr7 4325061 T-C Hetero INTERGENIC
SBS Chr8 6980502 C-T Hetero INTERGENIC
SBS Chr8 23877553 G-A Hetero INTERGENIC
SBS Chr9 546711 G-T Hetero INTERGENIC
SBS Chr9 546715 A-T Hetero INTERGENIC
SBS Chr9 3802764 G-A Hetero INTERGENIC
SBS Chr9 11850607 C-G Hetero SYNONYMOUS_CODING
SBS Chr9 22467370 G-T Hetero INTRON
SBS Chr10 1305740 C-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 184285 184287 2
Deletion Chr10 2058823 2058824 1
Deletion Chr9 2961160 2961170 10
Deletion Chr9 3008001 3109000 100999 9
Deletion Chr11 3334054 3334060 6
Deletion Chr9 3802581 3802592 11
Deletion Chr8 5540658 5540659 1
Deletion Chr4 6472970 6472973 3
Deletion Chr6 8699531 8699532 1
Deletion Chr4 10451260 10451269 9
Deletion Chr8 10655518 10655523 5
Deletion Chr4 11153883 11153888 5
Deletion Chr2 12249253 12249256 3
Deletion Chr7 13721001 13730000 8999
Deletion Chr6 19121458 19121459 1
Deletion Chr11 21275472 21275473 1
Deletion Chr8 23551769 23551770 1
Deletion Chr2 26748915 26748917 2
Deletion Chr3 27334458 27334464 6
Deletion Chr3 34021111 34021113 2
Deletion Chr1 34789120 34789137 17

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18319526 18319529 2
Insertion Chr3 8574252 8574254 1
Insertion Chr8 615099 615102 2
Insertion Chr10 20463812 20463815 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 595272 Chr4 25407151 OsKitaake04g174000
Translocation Chr9 3008623 Chr7 27015149 OsKitaake07g252400
Translocation Chr9 3009586 Chr7 27015152 OsKitaake07g252400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12217095	A-T	Hetero	INTERGENIC
SBS	Chr1	30254034	T-C	Hetero	INTRON
SBS	Chr1	30254035	A-T	Hetero	INTRON
SBS	Chr1	30257713	A-G	Hetero	INTERGENIC
SBS	Chr1	30774096	C-T	Hetero	INTERGENIC
SBS	Chr1	33717787	C-G	Hetero	INTRON
SBS	Chr2	24523601	G-A	Homo	INTERGENIC
SBS	Chr2	30762703	C-T	Hetero	INTERGENIC
SBS	Chr3	8989453	A-G	Hetero	INTERGENIC
SBS	Chr4	12320383	A-T	Homo	SPLICE_SITE_REGION
SBS	Chr4	31081779	G-A	Homo	INTERGENIC
SBS	Chr5	16313537	T-G	Hetero	INTERGENIC
SBS	Chr5	19516694	A-G	Hetero	INTERGENIC
SBS	Chr5	21751386	T-A	Hetero	INTERGENIC
SBS	Chr6	8582415	T-C	Homo	INTRON
SBS	Chr7	4325061	T-C	Hetero	INTERGENIC
SBS	Chr8	6980502	C-T	Hetero	INTERGENIC
SBS	Chr8	23877553	G-A	Hetero	INTERGENIC
SBS	Chr9	546711	G-T	Hetero	INTERGENIC
SBS	Chr9	546715	A-T	Hetero	INTERGENIC
SBS	Chr9	3802764	G-A	Hetero	INTERGENIC
SBS	Chr9	11850607	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	22467370	G-T	Hetero	INTRON
SBS	Chr10	1305740	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	184285	184287	2
Deletion	Chr10	2058823	2058824	1
Deletion	Chr9	2961160	2961170	10
Deletion	Chr9	3008001	3109000	100999	9
Deletion	Chr11	3334054	3334060	6
Deletion	Chr9	3802581	3802592	11
Deletion	Chr8	5540658	5540659	1
Deletion	Chr4	6472970	6472973	3
Deletion	Chr6	8699531	8699532	1
Deletion	Chr4	10451260	10451269	9
Deletion	Chr8	10655518	10655523	5
Deletion	Chr4	11153883	11153888	5
Deletion	Chr2	12249253	12249256	3
Deletion	Chr7	13721001	13730000	8999
Deletion	Chr6	19121458	19121459	1
Deletion	Chr11	21275472	21275473	1
Deletion	Chr8	23551769	23551770	1
Deletion	Chr2	26748915	26748917	2
Deletion	Chr3	27334458	27334464	6
Deletion	Chr3	34021111	34021113	2
Deletion	Chr1	34789120	34789137	17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	595272	Chr4	25407151	OsKitaake04g174000
Translocation	Chr9	3008623	Chr7	27015149	OsKitaake07g252400
Translocation	Chr9	3009586	Chr7	27015152	OsKitaake07g252400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes