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| Mutant Information |
|---|
| Mutant Name | FN3474-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3474-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3556864 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38258227 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28062323 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32534419 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13659546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19531301 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25221571 | T-A | Homo | INTRON | |
| SBS | Chr3 | 37719738 | G-C | Hetero | INTRON | |
| SBS | Chr4 | 4308531 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6866817 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18647224 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22688665 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 33729130 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3865805 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15338474 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15886289 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25527928 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8773025 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10765139 | A-T | Homo | INTRON | |
| SBS | Chr6 | 24490078 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5028892 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1770949 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7356068 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12018300 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9097774 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14084072 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14693815 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21725568 | T-G | Homo | INTERGENIC | |
| SBS | Chr11 | 7337245 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25061709 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20681824 | C-T | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 5304344 | 5304359 | 15 | |
| Deletion | Chr5 | 6365412 | 6365413 | 1 | |
| Deletion | Chr5 | 11841360 | 11841367 | 7 | |
| Deletion | Chr2 | 15031890 | 15031892 | 2 | |
| Deletion | Chr9 | 15349500 | 15349501 | 1 | |
| Deletion | Chr3 | 15358754 | 15358762 | 8 | |
| Deletion | Chr7 | 16804217 | 16804226 | 9 | OsKitaake07g137800 |
| Deletion | Chr3 | 18612879 | 18612881 | 2 | |
| Deletion | Chr2 | 20269229 | 20269230 | 1 | |
| Deletion | Chr2 | 22628672 | 22628677 | 5 | |
| Deletion | Chr7 | 22951505 | 22951507 | 2 | |
| Deletion | Chr3 | 23076001 | 23286000 | 209999 | 14 |
| Deletion | Chr11 | 24675359 | 24675361 | 2 | |
| Deletion | Chr5 | 26913001 | 27011000 | 97999 | 11 |
| Deletion | Chr11 | 28449197 | 28449198 | 1 | |
| Deletion | Chr3 | 28586001 | 28595000 | 8999 | OsKitaake03g296500 |
| Deletion | Chr11 | 28824290 | 28824292 | 2 | |
| Deletion | Chr1 | 32154363 | 32154365 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 44159912 | 44159919 | 6 | OsKitaake01g493050  |
| Insertion | Chr7 | 21976534 | 21976538 | 3 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 16720258 | 16849632 | OsKitaake05g128100 |
| Inversion | Chr5 | 16720261 | 16849636 | OsKitaake05g128100 |
| Inversion | Chr3 | 22530474 | 23072951 | |
| Inversion | Chr3 | 22530480 | 23290831 | |
| Inversion | Chr5 | 26475324 | 26902464 | 2 |
| Inversion | Chr5 | 26475341 | 26850077 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 15716005 | Chr2 | 22982868 | |
| Translocation | Chr5 | 15716008 | Chr2 | 22917854 | OsKitaake02g223300 |