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Mutant Information

Mutant Name	FN3475-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3475-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27607724 C-T Homo INTERGENIC
SBS Chr2 20751 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 13721509 C-T Hetero INTERGENIC
SBS Chr4 36805422 A-T Homo INTERGENIC
SBS Chr5 9854067 G-T Homo INTERGENIC
SBS Chr5 18534701 C-T Hetero INTERGENIC
SBS Chr6 4606838 T-G Hetero INTERGENIC
SBS Chr6 10546518 C-T Hetero INTERGENIC
SBS Chr6 15346544 C-T Hetero INTERGENIC
SBS Chr6 23714406 G-A Hetero INTERGENIC
SBS Chr7 4044043 G-A Hetero INTERGENIC
SBS Chr7 22214706 G-A Homo INTERGENIC
SBS Chr8 6777595 C-T Hetero INTERGENIC
SBS Chr8 23084429 T-A Hetero INTERGENIC
SBS Chr9 2022635 T-G Hetero INTRON
SBS Chr11 13651065 T-C Hetero INTERGENIC
SBS Chr11 20161323 C-T Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2867515 2867516 1
Deletion Chr7 3264468 3264473 5
Deletion Chr7 5717085 5717090 5
Deletion Chr8 8803963 8803970 7
Deletion Chr1 9633001 9661000 27999 2
Deletion Chr10 10801609 10801634 25
Deletion Chr5 11216315 11216321 6
Deletion Chr2 14000069 14000083 14
Deletion Chr1 14678001 14693000 14999 OsKitaake01g166200
Deletion Chr6 19725099 19725108 9 OsKitaake06g177200
Deletion Chr4 20713001 20723000 9999 OsKitaake04g112300
Deletion Chr6 21089419 21089426 7
Deletion Chr1 23257001 23272000 14999 OsKitaake01g222400
Deletion Chr6 23390495 23390497 2
Deletion Chr5 23511326 23511333 7
Deletion Chr3 23588802 23588803 1
Deletion Chr11 28325643 28325647 4
Deletion Chr7 29098048 29098056 8
Deletion Chr1 31851454 31851456 2
Deletion Chr2 32612645 32612652 7
Deletion Chr1 44034991 44034997 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 9779143 9779145 1
Insertion Chr10 9138002 9138007 4
Insertion Chr11 19653789 19653794 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5353313 5378591 2
Inversion Chr7 5353316 5378721 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 18774746 Chr2 208002 OsKitaake11g145950
Translocation Chr12 27043401 Chr11 2400153 2
Translocation Chr12 27047384 Chr2 209025 OsKitaake12g227300
Translocation Chr12 27141546 Chr2 207983
Translocation Chr12 27141550 Chr2 209035

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27607724	C-T	Homo	INTERGENIC
SBS	Chr2	20751	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	13721509	C-T	Hetero	INTERGENIC
SBS	Chr4	36805422	A-T	Homo	INTERGENIC
SBS	Chr5	9854067	G-T	Homo	INTERGENIC
SBS	Chr5	18534701	C-T	Hetero	INTERGENIC
SBS	Chr6	4606838	T-G	Hetero	INTERGENIC
SBS	Chr6	10546518	C-T	Hetero	INTERGENIC
SBS	Chr6	15346544	C-T	Hetero	INTERGENIC
SBS	Chr6	23714406	G-A	Hetero	INTERGENIC
SBS	Chr7	4044043	G-A	Hetero	INTERGENIC
SBS	Chr7	22214706	G-A	Homo	INTERGENIC
SBS	Chr8	6777595	C-T	Hetero	INTERGENIC
SBS	Chr8	23084429	T-A	Hetero	INTERGENIC
SBS	Chr9	2022635	T-G	Hetero	INTRON
SBS	Chr11	13651065	T-C	Hetero	INTERGENIC
SBS	Chr11	20161323	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2867515	2867516	1
Deletion	Chr7	3264468	3264473	5
Deletion	Chr7	5717085	5717090	5
Deletion	Chr8	8803963	8803970	7
Deletion	Chr1	9633001	9661000	27999	2
Deletion	Chr10	10801609	10801634	25
Deletion	Chr5	11216315	11216321	6
Deletion	Chr2	14000069	14000083	14
Deletion	Chr1	14678001	14693000	14999	OsKitaake01g166200
Deletion	Chr6	19725099	19725108	9	OsKitaake06g177200
Deletion	Chr4	20713001	20723000	9999	OsKitaake04g112300
Deletion	Chr6	21089419	21089426	7
Deletion	Chr1	23257001	23272000	14999	OsKitaake01g222400
Deletion	Chr6	23390495	23390497	2
Deletion	Chr5	23511326	23511333	7
Deletion	Chr3	23588802	23588803	1
Deletion	Chr11	28325643	28325647	4
Deletion	Chr7	29098048	29098056	8
Deletion	Chr1	31851454	31851456	2
Deletion	Chr2	32612645	32612652	7
Deletion	Chr1	44034991	44034997	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5353313	5378591	2
Inversion	Chr7	5353316	5378721	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes