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| Mutant Information |
|---|
| Mutant Name | FN3476-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3476-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1060148 | T-A | Homo | INTRON | |
| SBS | Chr1 | 1060149 | C-A | Homo | INTRON | |
| SBS | Chr1 | 8257249 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 18446259 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1482239 | T-C | Homo | INTRON | |
| SBS | Chr2 | 7334614 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 11451316 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 7148201 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16960746 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 17272885 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8412423 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 9421552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 34945813 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 10515386 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 16972718 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 8624815 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13478593 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 19671371 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 4524677 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 14582950 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3967017 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8034019 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 415813 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 415814 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3363995 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g046900 |
| SBS | Chr11 | 5365197 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 21579089 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 22678607 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 10764416 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18331253 | C-T | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 647567 | 647568 | 1 | |
| Deletion | Chr4 | 984575 | 984581 | 6 | |
| Deletion | Chr12 | 1829913 | 1829914 | 1 | |
| Deletion | Chr11 | 1887117 | 1887119 | 2 | |
| Deletion | Chr2 | 2182218 | 2182223 | 5 | |
| Deletion | Chr6 | 2225971 | 2225974 | 3 | |
| Deletion | Chr8 | 2921672 | 2921677 | 5 | |
| Deletion | Chr8 | 5053631 | 5053647 | 16 | |
| Deletion | Chr6 | 5393131 | 5393132 | 1 | |
| Deletion | Chr11 | 5665742 | 5665745 | 3 | |
| Deletion | Chr10 | 7873483 | 7873493 | 10 | |
| Deletion | Chr5 | 10515717 | 10515728 | 11 | |
| Deletion | Chr7 | 13524012 | 13524035 | 23 | |
| Deletion | Chr5 | 15915445 | 15915449 | 4 | |
| Deletion | Chr8 | 16108001 | 16123000 | 14999 | OsKitaake08g124166 |
| Deletion | Chr8 | 20817131 | 20817134 | 3 | |
| Deletion | Chr2 | 22132711 | 22132712 | 1 | |
| Deletion | Chr2 | 29488489 | 29488494 | 5 | |
| Deletion | Chr3 | 36201842 | 36201846 | 4 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 6520534 | 6520536 | 1 | |
| Insertion | Chr6 | 16592090 | 16592093 | 2 | |
| Insertion | Chr7 | 13607843 | 13607849 | 5 | |
| Insertion | Chr8 | 3382036 | 3382040 | 3 | |
| Insertion | Chr11 | 21036870 | 21036873 | 2 | OsKitaake11g166600  |