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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN3479-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3479-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9944181 G-A Hetero INTERGENIC
SBS Chr1 17884222 C-A Hetero INTERGENIC
SBS Chr1 26314470 A-G Hetero INTERGENIC
SBS Chr1 41892615 C-G Hetero INTERGENIC
SBS Chr2 19563323 C-T Homo INTERGENIC
SBS Chr3 8741182 G-A Homo INTERGENIC
SBS Chr3 14118521 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g184500
SBS Chr3 26297101 G-T Hetero INTERGENIC
SBS Chr3 27845955 G-T Homo UTR_5_PRIME
SBS Chr4 4822806 C-T Hetero INTERGENIC
SBS Chr4 11461793 C-T Homo INTERGENIC
SBS Chr4 26051526 A-G Homo UTR_3_PRIME
SBS Chr4 28361250 C-A Homo INTERGENIC
SBS Chr4 29615930 G-A Homo INTERGENIC
SBS Chr6 1659231 T-C Hetero INTERGENIC
SBS Chr6 12933448 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g137400
SBS Chr6 24200683 A-G Hetero INTERGENIC
SBS Chr6 27451799 A-T Homo INTRON
SBS Chr6 28761073 C-A Homo INTERGENIC
SBS Chr6 29096111 A-T Homo STOP_GAINED OsKitaake06g268400
SBS Chr6 29096112 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g268400
SBS Chr6 29096113 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g268400
SBS Chr7 10361537 T-C Homo INTRON
SBS Chr8 18627438 G-A Hetero INTERGENIC
SBS Chr10 2133906 T-A Hetero INTERGENIC
SBS Chr10 5321517 G-A Hetero INTERGENIC
SBS Chr10 14110980 T-A Hetero INTERGENIC
SBS Chr10 14122446 G-T Hetero INTERGENIC
SBS Chr10 14727317 G-T Hetero INTERGENIC
SBS Chr11 11778855 C-T Homo INTERGENIC
SBS Chr11 17946319 A-C Homo INTRON
SBS Chr11 27458809 G-A Hetero INTERGENIC
SBS Chr12 5298442 C-T Hetero INTERGENIC
SBS Chr12 7652869 A-C Hetero INTERGENIC
SBS Chr12 7951079 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g084500
SBS Chr12 22635900 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2848001 2904000 55999 12
Deletion Chr7 6942260 6942277 17
Deletion Chr9 7157101 7157111 10 OsKitaake09g041700
Deletion Chr6 7772254 7772255 1
Deletion Chr2 8512099 8512109 10
Deletion Chr12 10086329 10086330 1
Deletion Chr7 10465115 10465142 27
Deletion Chr8 11048349 11048358 9
Deletion Chr7 11058359 11058370 11
Deletion Chr10 11723445 11723451 6
Deletion Chr10 14282503 14282505 2
Deletion Chr8 17806613 17806614 1
Deletion Chr6 25094864 25094887 23 OsKitaake06g222300
Deletion Chr8 26183998 26183999 1 OsKitaake08g208700
Deletion Chr1 26628675 26628689 14
Deletion Chr6 27918001 27935000 16999 OsKitaake06g253400
Deletion Chr2 30412229 30412231 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25535087 25535090 2
Insertion Chr3 1999409 1999412 2
Insertion Chr6 8904295 8904298 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4373015 4486111 2
Inversion Chr8 4823679 5480324 OsKitaake08g059700
Inversion Chr8 4823689 5480324 OsKitaake08g059700
Inversion Chr8 13445525 13446020
Inversion Chr6 13582430 13925054 OsKitaake06g142450
Inversion Chr6 13582434 13925066 OsKitaake06g142450
Inversion Chr6 23797070 23811852 OsKitaake06g209500
Inversion Chr6 23797073 23811852 OsKitaake06g209500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9944181	G-A	Hetero	INTERGENIC
SBS	Chr1	17884222	C-A	Hetero	INTERGENIC
SBS	Chr1	26314470	A-G	Hetero	INTERGENIC
SBS	Chr1	41892615	C-G	Hetero	INTERGENIC
SBS	Chr2	19563323	C-T	Homo	INTERGENIC
SBS	Chr3	8741182	G-A	Homo	INTERGENIC
SBS	Chr3	14118521	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g184500
SBS	Chr3	26297101	G-T	Hetero	INTERGENIC
SBS	Chr3	27845955	G-T	Homo	UTR_5_PRIME
SBS	Chr4	4822806	C-T	Hetero	INTERGENIC
SBS	Chr4	11461793	C-T	Homo	INTERGENIC
SBS	Chr4	26051526	A-G	Homo	UTR_3_PRIME
SBS	Chr4	28361250	C-A	Homo	INTERGENIC
SBS	Chr4	29615930	G-A	Homo	INTERGENIC
SBS	Chr6	1659231	T-C	Hetero	INTERGENIC
SBS	Chr6	12933448	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g137400
SBS	Chr6	24200683	A-G	Hetero	INTERGENIC
SBS	Chr6	27451799	A-T	Homo	INTRON
SBS	Chr6	28761073	C-A	Homo	INTERGENIC
SBS	Chr6	29096111	A-T	Homo	STOP_GAINED	OsKitaake06g268400
SBS	Chr6	29096112	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g268400
SBS	Chr6	29096113	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g268400
SBS	Chr7	10361537	T-C	Homo	INTRON
SBS	Chr8	18627438	G-A	Hetero	INTERGENIC
SBS	Chr10	2133906	T-A	Hetero	INTERGENIC
SBS	Chr10	5321517	G-A	Hetero	INTERGENIC
SBS	Chr10	14110980	T-A	Hetero	INTERGENIC
SBS	Chr10	14122446	G-T	Hetero	INTERGENIC
SBS	Chr10	14727317	G-T	Hetero	INTERGENIC
SBS	Chr11	11778855	C-T	Homo	INTERGENIC
SBS	Chr11	17946319	A-C	Homo	INTRON
SBS	Chr11	27458809	G-A	Hetero	INTERGENIC
SBS	Chr12	5298442	C-T	Hetero	INTERGENIC
SBS	Chr12	7652869	A-C	Hetero	INTERGENIC
SBS	Chr12	7951079	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g084500
SBS	Chr12	22635900	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2848001	2904000	55999	12
Deletion	Chr7	6942260	6942277	17
Deletion	Chr9	7157101	7157111	10	OsKitaake09g041700
Deletion	Chr6	7772254	7772255	1
Deletion	Chr2	8512099	8512109	10
Deletion	Chr12	10086329	10086330	1
Deletion	Chr7	10465115	10465142	27
Deletion	Chr8	11048349	11048358	9
Deletion	Chr7	11058359	11058370	11
Deletion	Chr10	11723445	11723451	6
Deletion	Chr10	14282503	14282505	2
Deletion	Chr8	17806613	17806614	1
Deletion	Chr6	25094864	25094887	23	OsKitaake06g222300
Deletion	Chr8	26183998	26183999	1	OsKitaake08g208700
Deletion	Chr1	26628675	26628689	14
Deletion	Chr6	27918001	27935000	16999	OsKitaake06g253400
Deletion	Chr2	30412229	30412231	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4373015	4486111	2
Inversion	Chr8	4823679	5480324	OsKitaake08g059700
Inversion	Chr8	4823689	5480324	OsKitaake08g059700
Inversion	Chr8	13445525	13446020
Inversion	Chr6	13582430	13925054	OsKitaake06g142450
Inversion	Chr6	13582434	13925066	OsKitaake06g142450
Inversion	Chr6	23797070	23811852	OsKitaake06g209500
Inversion	Chr6	23797073	23811852	OsKitaake06g209500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes