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Mutant Information

Mutant Name	FN3480-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3480-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17275737 T-G Homo INTERGENIC
SBS Chr1 23132670 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g220500
SBS Chr2 9794096 C-T Hetero INTERGENIC
SBS Chr2 10346358 G-A Hetero INTRON
SBS Chr3 24328688 T-A Homo STOP_GAINED OsKitaake03g260450
SBS Chr3 26360569 G-A Homo INTERGENIC
SBS Chr4 4496158 G-T Homo INTERGENIC
SBS Chr4 7345495 C-T Hetero INTERGENIC
SBS Chr4 12901968 C-T Homo INTERGENIC
SBS Chr4 18667668 C-A Homo INTERGENIC
SBS Chr4 26832917 G-A Hetero INTERGENIC
SBS Chr5 423329 T-C Homo INTERGENIC
SBS Chr5 15082635 G-A Hetero INTERGENIC
SBS Chr5 16082681 C-T Hetero INTERGENIC
SBS Chr6 11592751 G-A Hetero INTERGENIC
SBS Chr6 15016022 C-T Hetero INTERGENIC
SBS Chr6 17234853 C-T Hetero INTERGENIC
SBS Chr6 19496506 A-G Hetero INTERGENIC
SBS Chr6 30310067 G-C Homo NON_SYNONYMOUS_CODING OsKitaake06g284400
SBS Chr7 10493400 A-T Hetero INTERGENIC
SBS Chr7 12644872 G-A Hetero INTERGENIC
SBS Chr7 12648341 G-A Hetero INTERGENIC
SBS Chr7 14051332 C-A Hetero INTERGENIC
SBS Chr7 20280832 T-G Hetero INTRON
SBS Chr7 22215589 G-A Hetero INTERGENIC
SBS Chr7 26916910 A-G Hetero INTRON
SBS Chr8 11893087 C-T Homo INTERGENIC
SBS Chr8 27788338 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g229700
SBS Chr9 3720993 G-A Hetero INTERGENIC
SBS Chr9 20077004 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g167600
SBS Chr10 5462412 C-T Homo INTERGENIC
SBS Chr10 10875551 G-A Homo INTERGENIC
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr10 22234792 G-T Homo UTR_3_PRIME
SBS Chr12 1803134 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 4234845 A-T Homo INTERGENIC
SBS Chr12 9588077 C-G Homo NON_SYNONYMOUS_CODING OsKitaake12g092600
SBS Chr12 17027391 C-G Hetero INTERGENIC
SBS Chr12 17429050 T-G Hetero INTERGENIC
SBS Chr12 19202473 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g142900

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 259915 259919 4
Deletion Chr1 4013222 4013224 2
Deletion Chr11 9490915 9490925 10
Deletion Chr4 9981500 9981501 1
Deletion Chr11 10408069 10408084 15
Deletion Chr8 11432001 11460000 27999 OsKitaake08g101301
Deletion Chr9 11613251 11613252 1
Deletion Chr9 14053567 14053605 38
Deletion Chr10 14265105 14265117 12
Deletion Chr1 14494813 14494819 6
Deletion Chr11 15863148 15863149 1
Deletion Chr2 17004683 17004684 1
Deletion Chr10 17184303 17184312 9
Deletion Chr2 17529823 17529824 1
Deletion Chr12 17811183 17811185 2
Deletion Chr3 19044142 19044148 6
Deletion Chr9 20264762 20264764 2
Deletion Chr4 21238541 21238542 1
Deletion Chr7 21582332 21582337 5
Deletion Chr1 24942941 24942954 13
Deletion Chr12 26723647 26723648 1
Deletion Chr8 27723488 27723490 2
Deletion Chr6 30574375 30574383 8 OsKitaake06g288200
Deletion Chr2 35594225 35594237 12

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 18783507 18783510 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 25886196 26090857 2
Inversion Chr12 25886211 26090863 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 18848806 Chr3 35684089 OsKitaake03g391900
Translocation Chr6 18849676 Chr3 35684089 OsKitaake03g391900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17275737	T-G	Homo	INTERGENIC
SBS	Chr1	23132670	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g220500
SBS	Chr2	9794096	C-T	Hetero	INTERGENIC
SBS	Chr2	10346358	G-A	Hetero	INTRON
SBS	Chr3	24328688	T-A	Homo	STOP_GAINED	OsKitaake03g260450
SBS	Chr3	26360569	G-A	Homo	INTERGENIC
SBS	Chr4	4496158	G-T	Homo	INTERGENIC
SBS	Chr4	7345495	C-T	Hetero	INTERGENIC
SBS	Chr4	12901968	C-T	Homo	INTERGENIC
SBS	Chr4	18667668	C-A	Homo	INTERGENIC
SBS	Chr4	26832917	G-A	Hetero	INTERGENIC
SBS	Chr5	423329	T-C	Homo	INTERGENIC
SBS	Chr5	15082635	G-A	Hetero	INTERGENIC
SBS	Chr5	16082681	C-T	Hetero	INTERGENIC
SBS	Chr6	11592751	G-A	Hetero	INTERGENIC
SBS	Chr6	15016022	C-T	Hetero	INTERGENIC
SBS	Chr6	17234853	C-T	Hetero	INTERGENIC
SBS	Chr6	19496506	A-G	Hetero	INTERGENIC
SBS	Chr6	30310067	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g284400
SBS	Chr7	10493400	A-T	Hetero	INTERGENIC
SBS	Chr7	12644872	G-A	Hetero	INTERGENIC
SBS	Chr7	12648341	G-A	Hetero	INTERGENIC
SBS	Chr7	14051332	C-A	Hetero	INTERGENIC
SBS	Chr7	20280832	T-G	Hetero	INTRON
SBS	Chr7	22215589	G-A	Hetero	INTERGENIC
SBS	Chr7	26916910	A-G	Hetero	INTRON
SBS	Chr8	11893087	C-T	Homo	INTERGENIC
SBS	Chr8	27788338	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g229700
SBS	Chr9	3720993	G-A	Hetero	INTERGENIC
SBS	Chr9	20077004	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g167600
SBS	Chr10	5462412	C-T	Homo	INTERGENIC
SBS	Chr10	10875551	G-A	Homo	INTERGENIC
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr10	22234792	G-T	Homo	UTR_3_PRIME
SBS	Chr12	1803134	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	4234845	A-T	Homo	INTERGENIC
SBS	Chr12	9588077	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g092600
SBS	Chr12	17027391	C-G	Hetero	INTERGENIC
SBS	Chr12	17429050	T-G	Hetero	INTERGENIC
SBS	Chr12	19202473	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g142900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	259915	259919	4
Deletion	Chr1	4013222	4013224	2
Deletion	Chr11	9490915	9490925	10
Deletion	Chr4	9981500	9981501	1
Deletion	Chr11	10408069	10408084	15
Deletion	Chr8	11432001	11460000	27999	OsKitaake08g101301
Deletion	Chr9	11613251	11613252	1
Deletion	Chr9	14053567	14053605	38
Deletion	Chr10	14265105	14265117	12
Deletion	Chr1	14494813	14494819	6
Deletion	Chr11	15863148	15863149	1
Deletion	Chr2	17004683	17004684	1
Deletion	Chr10	17184303	17184312	9
Deletion	Chr2	17529823	17529824	1
Deletion	Chr12	17811183	17811185	2
Deletion	Chr3	19044142	19044148	6
Deletion	Chr9	20264762	20264764	2
Deletion	Chr4	21238541	21238542	1
Deletion	Chr7	21582332	21582337	5
Deletion	Chr1	24942941	24942954	13
Deletion	Chr12	26723647	26723648	1
Deletion	Chr8	27723488	27723490	2
Deletion	Chr6	30574375	30574383	8	OsKitaake06g288200
Deletion	Chr2	35594225	35594237	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	25886196	26090857	2
Inversion	Chr12	25886211	26090863	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes