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Mutant Information

Mutant Name	FN3481-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3481-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12901982 T-A Homo INTERGENIC
SBS Chr1 15267668 C-A Hetero INTERGENIC
SBS Chr1 34524736 G-A Homo SYNONYMOUS_CODING
SBS Chr1 42866585 G-T Hetero INTRON
SBS Chr2 1321229 G-A Homo INTERGENIC
SBS Chr2 6604592 C-A Hetero INTRON
SBS Chr2 6813089 C-T Homo INTRON
SBS Chr2 25057454 G-T Hetero INTERGENIC
SBS Chr2 29749147 C-T Hetero INTERGENIC
SBS Chr3 15114450 C-T Hetero INTERGENIC
SBS Chr3 26406390 T-C Hetero INTERGENIC
SBS Chr3 32147983 G-A Homo INTERGENIC
SBS Chr4 2587177 G-A Hetero INTERGENIC
SBS Chr5 7544731 G-C Homo INTRON
SBS Chr6 10691921 T-A Homo UTR_3_PRIME
SBS Chr6 13047317 G-A Homo INTRON
SBS Chr6 17085748 C-A Homo INTERGENIC
SBS Chr6 20343667 G-A Hetero INTERGENIC
SBS Chr6 22526423 A-T Hetero INTERGENIC
SBS Chr6 26646957 C-T Hetero INTERGENIC
SBS Chr6 29581671 A-G Hetero SPLICE_SITE_REGION
SBS Chr7 5174770 G-C Hetero INTRON
SBS Chr9 786962 A-T Homo INTERGENIC
SBS Chr9 9694796 C-T Hetero INTRON
SBS Chr9 15605024 A-T Hetero INTERGENIC
SBS Chr10 11508247 T-A Homo INTERGENIC
SBS Chr10 11782229 G-C Hetero INTERGENIC
SBS Chr10 14479045 T-C Hetero INTERGENIC
SBS Chr10 14688922 T-A Hetero INTERGENIC
SBS Chr10 16818845 T-A Hetero INTERGENIC
SBS Chr10 20797988 C-G Hetero INTERGENIC
SBS Chr11 306598 A-T Hetero INTRON
SBS Chr11 4916989 A-T Hetero INTERGENIC
SBS Chr11 15476133 G-A Hetero INTERGENIC
SBS Chr11 23046582 A-G Homo INTERGENIC
SBS Chr12 11011633 C-T Homo INTRON
SBS Chr12 26418968 G-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2527001 2741000 213999 21
Deletion Chr11 2745001 3064000 318999 50
Deletion Chr4 6584514 6584525 11
Deletion Chr1 12338001 12345000 6999 OsKitaake01g149600
Deletion Chr8 13577921 13577931 10
Deletion Chr8 14434001 14514000 79999 3
Deletion Chr10 14582982 14582990 8
Deletion Chr10 14959016 14959021 5
Deletion Chr6 15128001 15226000 97999 5
Deletion Chr11 15778273 15778284 11
Deletion Chr11 18413173 18413174 1
Deletion Chr11 19196547 19196549 2
Deletion Chr8 25204853 25204854 1
Deletion Chr5 28556424 28556425 1 OsKitaake05g266800
Deletion Chr1 43062266 43062267 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4682273 4682278 4
Insertion Chr5 6896396 6896399 2
Insertion Chr5 6785620 6785623 2 OsKitaake05g068400

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14537344 14756714 OsKitaake10g091100
Inversion Chr10 16493348 16536171 OsKitaake10g112000
Inversion Chr10 16493354 16536169 OsKitaake10g112000
Inversion Chr10 18022399 18540053 OsKitaake10g131800
Inversion Chr10 18022414 18544879 OsKitaake10g131800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 14485008 Chr3 16003147 2
Translocation Chr8 14517819 Chr7 29416058 OsKitaake07g282900
Translocation Chr7 29416059 Chr3 16002312 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12901982	T-A	Homo	INTERGENIC
SBS	Chr1	15267668	C-A	Hetero	INTERGENIC
SBS	Chr1	34524736	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	42866585	G-T	Hetero	INTRON
SBS	Chr2	1321229	G-A	Homo	INTERGENIC
SBS	Chr2	6604592	C-A	Hetero	INTRON
SBS	Chr2	6813089	C-T	Homo	INTRON
SBS	Chr2	25057454	G-T	Hetero	INTERGENIC
SBS	Chr2	29749147	C-T	Hetero	INTERGENIC
SBS	Chr3	15114450	C-T	Hetero	INTERGENIC
SBS	Chr3	26406390	T-C	Hetero	INTERGENIC
SBS	Chr3	32147983	G-A	Homo	INTERGENIC
SBS	Chr4	2587177	G-A	Hetero	INTERGENIC
SBS	Chr5	7544731	G-C	Homo	INTRON
SBS	Chr6	10691921	T-A	Homo	UTR_3_PRIME
SBS	Chr6	13047317	G-A	Homo	INTRON
SBS	Chr6	17085748	C-A	Homo	INTERGENIC
SBS	Chr6	20343667	G-A	Hetero	INTERGENIC
SBS	Chr6	22526423	A-T	Hetero	INTERGENIC
SBS	Chr6	26646957	C-T	Hetero	INTERGENIC
SBS	Chr6	29581671	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr7	5174770	G-C	Hetero	INTRON
SBS	Chr9	786962	A-T	Homo	INTERGENIC
SBS	Chr9	9694796	C-T	Hetero	INTRON
SBS	Chr9	15605024	A-T	Hetero	INTERGENIC
SBS	Chr10	11508247	T-A	Homo	INTERGENIC
SBS	Chr10	11782229	G-C	Hetero	INTERGENIC
SBS	Chr10	14479045	T-C	Hetero	INTERGENIC
SBS	Chr10	14688922	T-A	Hetero	INTERGENIC
SBS	Chr10	16818845	T-A	Hetero	INTERGENIC
SBS	Chr10	20797988	C-G	Hetero	INTERGENIC
SBS	Chr11	306598	A-T	Hetero	INTRON
SBS	Chr11	4916989	A-T	Hetero	INTERGENIC
SBS	Chr11	15476133	G-A	Hetero	INTERGENIC
SBS	Chr11	23046582	A-G	Homo	INTERGENIC
SBS	Chr12	11011633	C-T	Homo	INTRON
SBS	Chr12	26418968	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2527001	2741000	213999	21
Deletion	Chr11	2745001	3064000	318999	50
Deletion	Chr4	6584514	6584525	11
Deletion	Chr1	12338001	12345000	6999	OsKitaake01g149600
Deletion	Chr8	13577921	13577931	10
Deletion	Chr8	14434001	14514000	79999	3
Deletion	Chr10	14582982	14582990	8
Deletion	Chr10	14959016	14959021	5
Deletion	Chr6	15128001	15226000	97999	5
Deletion	Chr11	15778273	15778284	11
Deletion	Chr11	18413173	18413174	1
Deletion	Chr11	19196547	19196549	2
Deletion	Chr8	25204853	25204854	1
Deletion	Chr5	28556424	28556425	1	OsKitaake05g266800
Deletion	Chr1	43062266	43062267	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14537344	14756714	OsKitaake10g091100
Inversion	Chr10	16493348	16536171	OsKitaake10g112000
Inversion	Chr10	16493354	16536169	OsKitaake10g112000
Inversion	Chr10	18022399	18540053	OsKitaake10g131800
Inversion	Chr10	18022414	18544879	OsKitaake10g131800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes