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Mutant Information

Mutant Name	FN3482-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3482-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28649296 T-A Homo INTERGENIC
SBS Chr1 37198875 C-A Homo INTERGENIC
SBS Chr1 41747310 T-C Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr3 1928613 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3745389 A-G Hetero INTERGENIC
SBS Chr3 23232006 T-C Hetero INTERGENIC
SBS Chr5 18857350 G-C Hetero INTERGENIC
SBS Chr6 11632339 G-T Homo INTERGENIC
SBS Chr6 23274735 G-A Hetero INTERGENIC
SBS Chr6 23274736 G-A Hetero INTERGENIC
SBS Chr6 26797078 G-A Hetero INTERGENIC
SBS Chr7 18625661 G-T Homo INTERGENIC
SBS Chr7 20361005 C-G Hetero INTERGENIC
SBS Chr8 11077426 A-G Hetero INTERGENIC
SBS Chr8 14210719 T-G Hetero INTERGENIC
SBS Chr9 7704517 C-T Hetero INTERGENIC
SBS Chr10 4597141 T-G Hetero INTERGENIC
SBS Chr11 1774897 A-G Hetero UTR_3_PRIME
SBS Chr11 6804095 G-A Hetero INTRON
SBS Chr11 6804096 T-A Hetero INTRON
SBS Chr11 25438362 A-G Hetero INTERGENIC
SBS Chr11 27149656 C-T Hetero INTERGENIC
SBS Chr12 1009104 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 5532742 A-T Hetero INTERGENIC
SBS Chr12 14262218 A-G Hetero INTERGENIC
SBS Chr12 15513073 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1648387 1648390 3
Deletion Chr5 3042155 3042156 1
Deletion Chr10 3600451 3600452 1
Deletion Chr12 8813333 8813335 2
Deletion Chr9 12389261 12389267 6
Deletion Chr8 12625561 12625584 23
Deletion Chr5 14926530 14926535 5
Deletion Chr10 15653621 15653622 1
Deletion Chr7 22263036 22263052 16
Deletion Chr4 24459001 24473000 13999
Deletion Chr2 30626665 30626683 18
Deletion Chr3 32119841 32119844 3
Deletion Chr1 40205960 40205964 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18822554 18822557 2
Insertion Chr8 12905213 12905215 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 18725126 19403310
Inversion Chr12 18725132 19409180
Inversion Chr1 33137421 33563777 OsKitaake01g343800
Inversion Chr1 33137430 33563784 OsKitaake01g343800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 8185604 Chr1 6309408
Translocation Chr5 8185616 Chr1 6308813

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28649296	T-A	Homo	INTERGENIC
SBS	Chr1	37198875	C-A	Homo	INTERGENIC
SBS	Chr1	41747310	T-C	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3745389	A-G	Hetero	INTERGENIC
SBS	Chr3	23232006	T-C	Hetero	INTERGENIC
SBS	Chr5	18857350	G-C	Hetero	INTERGENIC
SBS	Chr6	11632339	G-T	Homo	INTERGENIC
SBS	Chr6	23274735	G-A	Hetero	INTERGENIC
SBS	Chr6	23274736	G-A	Hetero	INTERGENIC
SBS	Chr6	26797078	G-A	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Homo	INTERGENIC
SBS	Chr7	20361005	C-G	Hetero	INTERGENIC
SBS	Chr8	11077426	A-G	Hetero	INTERGENIC
SBS	Chr8	14210719	T-G	Hetero	INTERGENIC
SBS	Chr9	7704517	C-T	Hetero	INTERGENIC
SBS	Chr10	4597141	T-G	Hetero	INTERGENIC
SBS	Chr11	1774897	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	6804095	G-A	Hetero	INTRON
SBS	Chr11	6804096	T-A	Hetero	INTRON
SBS	Chr11	25438362	A-G	Hetero	INTERGENIC
SBS	Chr11	27149656	C-T	Hetero	INTERGENIC
SBS	Chr12	1009104	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	5532742	A-T	Hetero	INTERGENIC
SBS	Chr12	14262218	A-G	Hetero	INTERGENIC
SBS	Chr12	15513073	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1648387	1648390	3
Deletion	Chr5	3042155	3042156	1
Deletion	Chr10	3600451	3600452	1
Deletion	Chr12	8813333	8813335	2
Deletion	Chr9	12389261	12389267	6
Deletion	Chr8	12625561	12625584	23
Deletion	Chr5	14926530	14926535	5
Deletion	Chr10	15653621	15653622	1
Deletion	Chr7	22263036	22263052	16
Deletion	Chr4	24459001	24473000	13999
Deletion	Chr2	30626665	30626683	18
Deletion	Chr3	32119841	32119844	3
Deletion	Chr1	40205960	40205964	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	18725126	19403310
Inversion	Chr12	18725132	19409180
Inversion	Chr1	33137421	33563777	OsKitaake01g343800
Inversion	Chr1	33137430	33563784	OsKitaake01g343800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes