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Mutant Information

Mutant Name	FN3484-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3484-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2136831 G-A Hetero INTRON
SBS Chr1 2136833 C-T Hetero INTRON
SBS Chr1 17582219 T-C Hetero INTERGENIC
SBS Chr1 21820724 C-T Hetero INTERGENIC
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr1 24886190 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g240400
SBS Chr1 33390132 G-C Hetero INTRON
SBS Chr2 174058 C-T Hetero INTRON
SBS Chr2 174060 A-T Hetero INTRON
SBS Chr2 3393847 C-A Hetero INTERGENIC
SBS Chr2 9220323 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g115000
SBS Chr2 9220325 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g115000
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr2 31526054 G-A Hetero INTERGENIC
SBS Chr2 33342984 G-A Hetero INTERGENIC
SBS Chr3 2644080 C-A Homo INTERGENIC
SBS Chr3 7419910 G-A Hetero INTERGENIC
SBS Chr3 15942014 T-C Hetero INTRON
SBS Chr3 20908431 C-T Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 29527772 A-G Hetero INTRON
SBS Chr4 8463391 T-C Hetero INTERGENIC
SBS Chr4 13206681 C-T Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr4 25592897 G-A Hetero UTR_3_PRIME
SBS Chr5 3499489 G-T Hetero INTRON
SBS Chr5 26645486 A-G Hetero INTERGENIC
SBS Chr6 9648231 G-T Hetero INTERGENIC
SBS Chr6 11116065 T-A Hetero INTERGENIC
SBS Chr6 16947789 C-T Hetero INTERGENIC
SBS Chr6 24381993 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g215400
SBS Chr6 24529079 T-G Hetero UTR_3_PRIME
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 17201305 C-T Hetero INTERGENIC
SBS Chr7 18130543 T-A Hetero INTERGENIC
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr8 21553643 A-G Hetero INTRON
SBS Chr9 423271 T-A Hetero UTR_5_PRIME
SBS Chr9 423272 C-T Hetero UTR_5_PRIME
SBS Chr9 423276 G-A Hetero UTR_5_PRIME
SBS Chr9 4675850 A-T Hetero INTERGENIC
SBS Chr9 16798595 C-A Hetero INTERGENIC
SBS Chr9 16798596 T-A Hetero INTERGENIC
SBS Chr9 17860120 T-A Hetero INTRON
SBS Chr10 2007029 T-A Hetero INTERGENIC
SBS Chr11 5501277 T-A Hetero SPLICE_SITE_REGION
SBS Chr11 9389144 A-G Hetero INTRON
SBS Chr11 16613522 G-T Hetero INTERGENIC
SBS Chr11 20448664 G-A Hetero INTERGENIC
SBS Chr11 21864777 C-T Hetero INTERGENIC
SBS Chr12 5065930 G-A Hetero INTERGENIC
SBS Chr12 8239197 A-G Hetero INTERGENIC
SBS Chr12 12254846 G-A Hetero INTERGENIC
SBS Chr12 12652685 G-A Hetero INTERGENIC
SBS Chr12 20855247 C-T Hetero INTERGENIC
SBS Chr12 23321789 T-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 833543 833544 1
Deletion Chr10 1860001 1871000 10999 2
Deletion Chr10 2158001 2354000 195999 25
Deletion Chr10 2398001 2410000 11999
Deletion Chr9 3525644 3525650 6
Deletion Chr7 5997154 5997155 1
Deletion Chr5 11688186 11688191 5
Deletion Chr8 12986304 12986309 5
Deletion Chr2 15627413 15627422 9
Deletion Chr6 16876025 16876026 1
Deletion Chr2 21353477 21353480 3
Deletion Chr11 24510001 24657000 146999 21
Deletion Chr7 27012212 27012214 2
Deletion Chr8 27630001 27736000 105999 15
Deletion Chr11 28981154 28981155 1 OsKitaake11g237200
Deletion Chr5 30218637 30218990 353

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33669529 33669532 2
Insertion Chr5 16168465 16168468 2
Insertion Chr12 4052293 4052296 2
Insertion Chr4 11570664 11570667 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1859767 1968740 OsKitaake10g015500
Inversion Chr10 2015386 2153193
Inversion Chr11 9386313 9860818
Inversion Chr11 9386314 9860817

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2350554 Chr2 14675730 OsKitaake10g019250
Translocation Chr10 2398270 Chr2 14675726
Translocation Chr4 8898880 Chr1 17297046
Translocation Chr11 24513943 Chr10 1968767 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2136831	G-A	Hetero	INTRON
SBS	Chr1	2136833	C-T	Hetero	INTRON
SBS	Chr1	17582219	T-C	Hetero	INTERGENIC
SBS	Chr1	21820724	C-T	Hetero	INTERGENIC
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr1	24886190	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g240400
SBS	Chr1	33390132	G-C	Hetero	INTRON
SBS	Chr2	174058	C-T	Hetero	INTRON
SBS	Chr2	174060	A-T	Hetero	INTRON
SBS	Chr2	3393847	C-A	Hetero	INTERGENIC
SBS	Chr2	9220323	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g115000
SBS	Chr2	9220325	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g115000
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr2	31526054	G-A	Hetero	INTERGENIC
SBS	Chr2	33342984	G-A	Hetero	INTERGENIC
SBS	Chr3	2644080	C-A	Homo	INTERGENIC
SBS	Chr3	7419910	G-A	Hetero	INTERGENIC
SBS	Chr3	15942014	T-C	Hetero	INTRON
SBS	Chr3	20908431	C-T	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	29527772	A-G	Hetero	INTRON
SBS	Chr4	8463391	T-C	Hetero	INTERGENIC
SBS	Chr4	13206681	C-T	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr4	25592897	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	3499489	G-T	Hetero	INTRON
SBS	Chr5	26645486	A-G	Hetero	INTERGENIC
SBS	Chr6	9648231	G-T	Hetero	INTERGENIC
SBS	Chr6	11116065	T-A	Hetero	INTERGENIC
SBS	Chr6	16947789	C-T	Hetero	INTERGENIC
SBS	Chr6	24381993	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g215400
SBS	Chr6	24529079	T-G	Hetero	UTR_3_PRIME
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	17201305	C-T	Hetero	INTERGENIC
SBS	Chr7	18130543	T-A	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr8	21553643	A-G	Hetero	INTRON
SBS	Chr9	423271	T-A	Hetero	UTR_5_PRIME
SBS	Chr9	423272	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	423276	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	4675850	A-T	Hetero	INTERGENIC
SBS	Chr9	16798595	C-A	Hetero	INTERGENIC
SBS	Chr9	16798596	T-A	Hetero	INTERGENIC
SBS	Chr9	17860120	T-A	Hetero	INTRON
SBS	Chr10	2007029	T-A	Hetero	INTERGENIC
SBS	Chr11	5501277	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr11	9389144	A-G	Hetero	INTRON
SBS	Chr11	16613522	G-T	Hetero	INTERGENIC
SBS	Chr11	20448664	G-A	Hetero	INTERGENIC
SBS	Chr11	21864777	C-T	Hetero	INTERGENIC
SBS	Chr12	5065930	G-A	Hetero	INTERGENIC
SBS	Chr12	8239197	A-G	Hetero	INTERGENIC
SBS	Chr12	12254846	G-A	Hetero	INTERGENIC
SBS	Chr12	12652685	G-A	Hetero	INTERGENIC
SBS	Chr12	20855247	C-T	Hetero	INTERGENIC
SBS	Chr12	23321789	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	833543	833544	1
Deletion	Chr10	1860001	1871000	10999	2
Deletion	Chr10	2158001	2354000	195999	25
Deletion	Chr10	2398001	2410000	11999
Deletion	Chr9	3525644	3525650	6
Deletion	Chr7	5997154	5997155	1
Deletion	Chr5	11688186	11688191	5
Deletion	Chr8	12986304	12986309	5
Deletion	Chr2	15627413	15627422	9
Deletion	Chr6	16876025	16876026	1
Deletion	Chr2	21353477	21353480	3
Deletion	Chr11	24510001	24657000	146999	21
Deletion	Chr7	27012212	27012214	2
Deletion	Chr8	27630001	27736000	105999	15
Deletion	Chr11	28981154	28981155	1	OsKitaake11g237200
Deletion	Chr5	30218637	30218990	353

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1859767	1968740	OsKitaake10g015500
Inversion	Chr10	2015386	2153193
Inversion	Chr11	9386313	9860818
Inversion	Chr11	9386314	9860817

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes