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Mutant Information

Mutant Name	FN3485-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3485-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2396205 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g029600
SBS Chr1 41741236 T-A Homo INTRON
SBS Chr2 8141848 A-T Hetero INTERGENIC
SBS Chr3 10717387 G-T Hetero UTR_3_PRIME
SBS Chr3 32605118 C-A Hetero INTRON
SBS Chr4 7509610 T-C Homo INTERGENIC
SBS Chr6 11374661 G-A Hetero INTERGENIC
SBS Chr6 19780926 A-G Hetero INTERGENIC
SBS Chr7 1564779 G-T Homo INTERGENIC
SBS Chr7 1564780 T-A Homo INTERGENIC
SBS Chr7 11060359 A-C Hetero INTERGENIC
SBS Chr7 13875857 C-T Hetero INTERGENIC
SBS Chr7 28466439 G-A Homo INTERGENIC
SBS Chr8 20298682 G-A Homo UTR_5_PRIME
SBS Chr8 20298685 G-A Homo UTR_5_PRIME
SBS Chr9 12745878 G-A Hetero INTERGENIC
SBS Chr10 9610164 G-A Hetero INTERGENIC
SBS Chr10 19429994 G-A Homo INTERGENIC
SBS Chr11 2213276 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g032300
SBS Chr11 2213277 G-T Hetero STOP_GAINED OsKitaake11g032300
SBS Chr11 11463266 A-T Homo INTERGENIC
SBS Chr11 11463267 G-T Homo INTERGENIC
SBS Chr12 3881541 G-A Homo INTERGENIC
SBS Chr12 7744300 G-A Homo INTERGENIC
SBS Chr12 12319075 G-C Homo INTERGENIC
SBS Chr12 24654514 G-A Homo INTERGENIC
SBS Chr12 26009908 A-G Homo NON_SYNONYMOUS_CODING OsKitaake12g215300
SBS Chr12 27130175 A-G Homo INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 459420 459424 4
Deletion Chr11 1037790 1037801 11
Deletion Chr5 1065851 1065852 1
Deletion Chr7 2050801 2050812 11
Deletion Chr11 4104710 4104715 5
Deletion Chr3 8119272 8119273 1
Deletion Chr6 10615855 10615860 5 OsKitaake06g119400
Deletion Chr5 11113991 11113992 1
Deletion Chr10 12112731 12112733 2
Deletion Chr7 12472107 12472108 1
Deletion Chr6 17991101 17991106 5
Deletion Chr5 18881087 18881089 2
Deletion Chr6 19064066 19064068 2 OsKitaake06g172200
Deletion Chr12 19737137 19737139 2
Deletion Chr7 24727493 24727510 17 OsKitaake07g220600
Deletion Chr12 25984939 25984952 13
Deletion Chr1 26525632 26525637 5
Deletion Chr7 28466417 28466426 9
Deletion Chr7 28484405 28484406 1
Deletion Chr1 28981757 28981760 3
Deletion Chr8 28987674 28987676 2
Deletion Chr6 30636861 30636867 6
Deletion Chr4 33868523 33868524 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36655877 36655884 6
Insertion Chr9 17141437 17141440 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 4448656 4802498

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 6461348 Chr5 27759081 OsKitaake05g254100
Translocation Chr7 6461360 Chr5 27619807
Translocation Chr12 23319607 Chr2 32514793

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2396205	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g029600
SBS	Chr1	41741236	T-A	Homo	INTRON
SBS	Chr2	8141848	A-T	Hetero	INTERGENIC
SBS	Chr3	10717387	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	32605118	C-A	Hetero	INTRON
SBS	Chr4	7509610	T-C	Homo	INTERGENIC
SBS	Chr6	11374661	G-A	Hetero	INTERGENIC
SBS	Chr6	19780926	A-G	Hetero	INTERGENIC
SBS	Chr7	1564779	G-T	Homo	INTERGENIC
SBS	Chr7	1564780	T-A	Homo	INTERGENIC
SBS	Chr7	11060359	A-C	Hetero	INTERGENIC
SBS	Chr7	13875857	C-T	Hetero	INTERGENIC
SBS	Chr7	28466439	G-A	Homo	INTERGENIC
SBS	Chr8	20298682	G-A	Homo	UTR_5_PRIME
SBS	Chr8	20298685	G-A	Homo	UTR_5_PRIME
SBS	Chr9	12745878	G-A	Hetero	INTERGENIC
SBS	Chr10	9610164	G-A	Hetero	INTERGENIC
SBS	Chr10	19429994	G-A	Homo	INTERGENIC
SBS	Chr11	2213276	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g032300
SBS	Chr11	2213277	G-T	Hetero	STOP_GAINED	OsKitaake11g032300
SBS	Chr11	11463266	A-T	Homo	INTERGENIC
SBS	Chr11	11463267	G-T	Homo	INTERGENIC
SBS	Chr12	3881541	G-A	Homo	INTERGENIC
SBS	Chr12	7744300	G-A	Homo	INTERGENIC
SBS	Chr12	12319075	G-C	Homo	INTERGENIC
SBS	Chr12	24654514	G-A	Homo	INTERGENIC
SBS	Chr12	26009908	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g215300
SBS	Chr12	27130175	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	459420	459424	4
Deletion	Chr11	1037790	1037801	11
Deletion	Chr5	1065851	1065852	1
Deletion	Chr7	2050801	2050812	11
Deletion	Chr11	4104710	4104715	5
Deletion	Chr3	8119272	8119273	1
Deletion	Chr6	10615855	10615860	5	OsKitaake06g119400
Deletion	Chr5	11113991	11113992	1
Deletion	Chr10	12112731	12112733	2
Deletion	Chr7	12472107	12472108	1
Deletion	Chr6	17991101	17991106	5
Deletion	Chr5	18881087	18881089	2
Deletion	Chr6	19064066	19064068	2	OsKitaake06g172200
Deletion	Chr12	19737137	19737139	2
Deletion	Chr7	24727493	24727510	17	OsKitaake07g220600
Deletion	Chr12	25984939	25984952	13
Deletion	Chr1	26525632	26525637	5
Deletion	Chr7	28466417	28466426	9
Deletion	Chr7	28484405	28484406	1
Deletion	Chr1	28981757	28981760	3
Deletion	Chr8	28987674	28987676	2
Deletion	Chr6	30636861	30636867	6
Deletion	Chr4	33868523	33868524	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4448656	4802498

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes