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Mutant Information

Mutant Name	FN3486-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3486-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1011770 A-G Hetero INTRON
SBS Chr1 24933885 C-T Hetero INTERGENIC
SBS Chr1 24995492 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 35346978 G-A Homo INTERGENIC
SBS Chr2 11610974 T-A Hetero INTERGENIC
SBS Chr2 11613071 T-C Hetero INTERGENIC
SBS Chr2 12865100 C-A Hetero INTERGENIC
SBS Chr2 23299561 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g227900
SBS Chr2 24162973 A-G Hetero INTERGENIC
SBS Chr3 4592997 C-T Homo INTERGENIC
SBS Chr3 7004359 G-T Hetero INTERGENIC
SBS Chr3 22906461 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 7617095 G-T Homo INTERGENIC
SBS Chr4 7617096 C-T Homo INTERGENIC
SBS Chr5 14012700 C-A Hetero INTERGENIC
SBS Chr5 24788007 A-T Hetero INTERGENIC
SBS Chr6 18179742 A-T Hetero INTERGENIC
SBS Chr6 25640349 G-A Hetero INTERGENIC
SBS Chr6 27104823 A-T Hetero START_GAINED
SBS Chr7 16359170 A-T Hetero INTERGENIC
SBS Chr7 22465473 C-T Hetero INTERGENIC
SBS Chr8 27073214 T-A Hetero INTRON
SBS Chr9 7214765 T-A Hetero INTERGENIC
SBS Chr9 17005801 G-T Hetero INTERGENIC
SBS Chr9 20097972 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g168100
SBS Chr10 2611811 T-G Hetero INTRON
SBS Chr10 12435593 G-A Hetero INTERGENIC
SBS Chr10 21744201 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g174400
SBS Chr12 12279713 A-G Homo INTERGENIC
SBS Chr12 12292625 G-A Homo INTERGENIC
SBS Chr12 21451503 G-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 254481 254488 7
Deletion Chr5 3612464 3612492 28
Deletion Chr1 3891005 3891007 2
Deletion Chr10 3946893 3946901 8
Deletion Chr4 5420888 5420895 7
Deletion Chr9 7618783 7618790 7
Deletion Chr2 8603001 8611000 7999 OsKitaake02g109400
Deletion Chr5 9702276 9702280 4 OsKitaake05g088800
Deletion Chr4 9823486 9823487 1
Deletion Chr10 10016774 10016775 1
Deletion Chr1 14685001 14693000 7999 OsKitaake01g166200
Deletion Chr5 18599795 18599800 5
Deletion Chr4 19583829 19583851 22
Deletion Chr1 23252001 23272000 19999 OsKitaake01g222400
Deletion Chr7 24919001 25027000 107999 19
Deletion Chr7 25034001 25043000 8999 4
Deletion Chr3 25521001 25578000 56999 10
Deletion Chr3 25580001 25613000 32999 4
Deletion Chr4 25691402 25691419 17
Deletion Chr4 26286495 26286497 2
Deletion Chr6 27916001 27934000 17999 OsKitaake06g253400
Deletion Chr4 28167144 28167154 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 7756112 7756115 2
Insertion Chr12 1138948 1138951 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1431475 1538446
Inversion Chr4 1431488 1538497
Inversion Chr2 17865688 17872682 OsKitaake02g178500

Translocations: 11

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1828249 Chr1 43735754 OsKitaake01g486700
Translocation Chr3 2631493 Chr1 42964155 OsKitaake01g473700
Translocation Chr3 2631511 Chr1 42983813
Translocation Chr7 12973812 Chr4 1841252
Translocation Chr7 12973817 Chr1 43721492
Translocation Chr2 15856287 Chr1 43735762 OsKitaake01g486700
Translocation Chr7 21628836 Chr1 43737004 OsKitaake07g180900
Translocation Chr7 21629318 Chr2 15856281 OsKitaake07g180900
Translocation Chr7 24918376 Chr2 17865677 OsKitaake02g178500
Translocation Chr7 25043405 Chr1 17640877 OsKitaake07g224900
Translocation Chr7 25044761 Chr3 25751381

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1011770	A-G	Hetero	INTRON
SBS	Chr1	24933885	C-T	Hetero	INTERGENIC
SBS	Chr1	24995492	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	35346978	G-A	Homo	INTERGENIC
SBS	Chr2	11610974	T-A	Hetero	INTERGENIC
SBS	Chr2	11613071	T-C	Hetero	INTERGENIC
SBS	Chr2	12865100	C-A	Hetero	INTERGENIC
SBS	Chr2	23299561	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g227900
SBS	Chr2	24162973	A-G	Hetero	INTERGENIC
SBS	Chr3	4592997	C-T	Homo	INTERGENIC
SBS	Chr3	7004359	G-T	Hetero	INTERGENIC
SBS	Chr3	22906461	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	7617095	G-T	Homo	INTERGENIC
SBS	Chr4	7617096	C-T	Homo	INTERGENIC
SBS	Chr5	14012700	C-A	Hetero	INTERGENIC
SBS	Chr5	24788007	A-T	Hetero	INTERGENIC
SBS	Chr6	18179742	A-T	Hetero	INTERGENIC
SBS	Chr6	25640349	G-A	Hetero	INTERGENIC
SBS	Chr6	27104823	A-T	Hetero	START_GAINED
SBS	Chr7	16359170	A-T	Hetero	INTERGENIC
SBS	Chr7	22465473	C-T	Hetero	INTERGENIC
SBS	Chr8	27073214	T-A	Hetero	INTRON
SBS	Chr9	7214765	T-A	Hetero	INTERGENIC
SBS	Chr9	17005801	G-T	Hetero	INTERGENIC
SBS	Chr9	20097972	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g168100
SBS	Chr10	2611811	T-G	Hetero	INTRON
SBS	Chr10	12435593	G-A	Hetero	INTERGENIC
SBS	Chr10	21744201	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g174400
SBS	Chr12	12279713	A-G	Homo	INTERGENIC
SBS	Chr12	12292625	G-A	Homo	INTERGENIC
SBS	Chr12	21451503	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	254481	254488	7
Deletion	Chr5	3612464	3612492	28
Deletion	Chr1	3891005	3891007	2
Deletion	Chr10	3946893	3946901	8
Deletion	Chr4	5420888	5420895	7
Deletion	Chr9	7618783	7618790	7
Deletion	Chr2	8603001	8611000	7999	OsKitaake02g109400
Deletion	Chr5	9702276	9702280	4	OsKitaake05g088800
Deletion	Chr4	9823486	9823487	1
Deletion	Chr10	10016774	10016775	1
Deletion	Chr1	14685001	14693000	7999	OsKitaake01g166200
Deletion	Chr5	18599795	18599800	5
Deletion	Chr4	19583829	19583851	22
Deletion	Chr1	23252001	23272000	19999	OsKitaake01g222400
Deletion	Chr7	24919001	25027000	107999	19
Deletion	Chr7	25034001	25043000	8999	4
Deletion	Chr3	25521001	25578000	56999	10
Deletion	Chr3	25580001	25613000	32999	4
Deletion	Chr4	25691402	25691419	17
Deletion	Chr4	26286495	26286497	2
Deletion	Chr6	27916001	27934000	17999	OsKitaake06g253400
Deletion	Chr4	28167144	28167154	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1431475	1538446
Inversion	Chr4	1431488	1538497
Inversion	Chr2	17865688	17872682	OsKitaake02g178500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes