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| Mutant Information |
|---|
| Mutant Name | FN3487-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3487-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19991783 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 38607273 | T-C | Homo | INTRON | |
| SBS | Chr2 | 31401403 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 34468431 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 18959597 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27569502 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 31742095 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 36096812 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 8842004 | G-A | Homo | INTRON | |
| SBS | Chr5 | 28123805 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28123807 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18340402 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18806565 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16197619 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27907676 | C-T | Homo | INTRON | |
| SBS | Chr7 | 27907677 | A-T | Homo | INTRON | |
| SBS | Chr8 | 5870903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5933892 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 13076849 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23188385 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26068093 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 9417058 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21196102 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 2316712 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4469081 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5604540 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26463832 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15981369 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23746298 | G-A | Hetero | UTR_3_PRIME |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3523451 | 3523457 | 6 | |
| Deletion | Chr11 | 4783001 | 4803000 | 19999 | 2 |
| Deletion | Chr7 | 5497141 | 5497147 | 6 | |
| Deletion | Chr6 | 6378469 | 6378476 | 7 | |
| Deletion | Chr2 | 7218926 | 7218928 | 2 | |
| Deletion | Chr9 | 9832109 | 9832126 | 17 | OsKitaake09g059600 |
| Deletion | Chr7 | 10262278 | 10262288 | 10 | |
| Deletion | Chr8 | 10608777 | 10608779 | 2 | |
| Deletion | Chr12 | 12119595 | 12119596 | 1 | |
| Deletion | Chr10 | 14636001 | 14776000 | 139999 | 6 |
| Deletion | Chr12 | 16184962 | 16184969 | 7 | |
| Deletion | Chr8 | 16611147 | 16611151 | 4 | |
| Deletion | Chr10 | 17809706 | 17809721 | 15 | OsKitaake10g123300 |
| Deletion | Chr2 | 18300676 | 18300690 | 14 | OsKitaake02g181700 |
| Deletion | Chr12 | 22178081 | 22178082 | 1 | OsKitaake12g174800 |
| Deletion | Chr4 | 23409314 | 23409322 | 8 | |
| Deletion | Chr5 | 23536277 | 23536278 | 1 | |
| Deletion | Chr7 | 27743327 | 27743355 | 28 | |
| Deletion | Chr7 | 27855375 | 27855376 | 1 | |
| Deletion | Chr4 | 30417816 | 30417821 | 5 | OsKitaake04g234400 |
| Deletion | Chr1 | 36143284 | 36143292 | 8 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 37336729 | 37336734 | 4 | |
| Insertion | Chr4 | 19980351 | 19980354 | 2 | |
| Insertion | Chr8 | 1850126 | 1850128 | 1 | |
| Insertion | Chr9 | 12481372 | 12481376 | 3 | |
| Insertion | Chr10 | 17777275 | 17777282 | 6 | |
| Insertion | Chr11 | 21958123 | 21958128 | 4 | OsKitaake11g173800  |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 496828 | 512286 | OsKitaake11g005600 |
| Inversion | Chr11 | 496834 | 512658 | OsKitaake11g005600 |
| Inversion | Chr11 | 4408949 | 4481734 | OsKitaake11g059900 |