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| Mutant Information |
|---|
| Mutant Name | FN3488-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3488-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6693521 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 14606167 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g165900 |
| SBS | Chr1 | 25741174 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43459326 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18349443 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 29060898 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29386238 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1606536 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4321167 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4688242 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13659517 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 23054106 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 23054107 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g140033 |
| SBS | Chr4 | 36827258 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 13026674 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g101300 |
| SBS | Chr5 | 26226934 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26451956 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27720309 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5639891 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 6582383 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8431461 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2746346 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3066100 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4855059 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 6978851 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8281141 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21594720 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10686763 | G-T | Homo | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 412148 | 412149 | 1 | |
| Deletion | Chr3 | 1920001 | 1935000 | 14999 | 3 |
| Deletion | Chr8 | 9092226 | 9092227 | 1 | |
| Deletion | Chr8 | 18944837 | 18944848 | 11 | |
| Deletion | Chr5 | 20004097 | 20004106 | 9 | |
| Deletion | Chr12 | 20206774 | 20206780 | 6 | |
| Deletion | Chr8 | 22276152 | 22276162 | 10 | |
| Deletion | Chr6 | 22695799 | 22695801 | 2 | |
| Deletion | Chr1 | 23250001 | 23270000 | 19999 | 2 |
| Deletion | Chr6 | 25355394 | 25355395 | 1 | OsKitaake06g225300 |
| Deletion | Chr4 | 28960105 | 28960108 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29670107 | 29670112 | 4 | |
| Insertion | Chr2 | 20834599 | 20834602 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4535348 | 5217158 | 2 |
| Inversion | Chr5 | 4536357 | 5058731 | |
| Inversion | Chr10 | 21027547 | 21452071 | OsKitaake10g170300 |
| Inversion | Chr10 | 21027552 | 21452079 | OsKitaake10g170300 |