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Mutant Information

Mutant Name	FN3489-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3489-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3135530 T-A Hetero INTERGENIC
SBS Chr1 20895827 A-G Hetero INTERGENIC
SBS Chr1 43981374 C-A Homo INTERGENIC
SBS Chr2 24652347 C-T Homo SYNONYMOUS_CODING
SBS Chr2 29167379 C-A Homo INTERGENIC
SBS Chr3 1092498 T-A Hetero INTRON
SBS Chr3 14301478 A-T Hetero INTERGENIC
SBS Chr3 17968493 A-T Homo INTERGENIC
SBS Chr3 17968495 C-A Homo INTERGENIC
SBS Chr3 24698253 G-T Hetero INTERGENIC
SBS Chr4 9087722 C-T Hetero INTERGENIC
SBS Chr4 18493470 G-A Hetero INTERGENIC
SBS Chr5 10325538 G-A Hetero INTERGENIC
SBS Chr5 14390272 C-T Hetero INTERGENIC
SBS Chr5 14758438 A-G Hetero INTERGENIC
SBS Chr6 21843290 C-T Hetero INTERGENIC
SBS Chr7 27957051 T-A Homo INTERGENIC
SBS Chr8 9753035 C-T Hetero INTERGENIC
SBS Chr9 2162045 C-T Hetero INTERGENIC
SBS Chr9 3312816 C-T Hetero INTERGENIC
SBS Chr10 2604246 G-A Hetero INTERGENIC
SBS Chr10 14264710 G-A Hetero INTERGENIC
SBS Chr10 16527681 T-A Hetero INTERGENIC
SBS Chr11 8328036 C-T Hetero INTERGENIC
SBS Chr11 11188166 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g107400
SBS Chr11 18011612 C-A Hetero INTERGENIC
SBS Chr11 18011613 G-T Hetero INTERGENIC
SBS Chr12 17845981 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2379986 2379987 1
Deletion Chr2 3004079 3004080 1 OsKitaake02g042851
Deletion Chr12 3359106 3359108 2
Deletion Chr3 4533236 4533238 2 OsKitaake03g065300
Deletion Chr2 4588921 4588956 35
Deletion Chr8 7129966 7129970 4
Deletion Chr11 9284001 9414000 129999 13
Deletion Chr7 12049680 12049685 5
Deletion Chr12 12104754 12104765 11
Deletion Chr1 18491782 18491790 8 OsKitaake01g185600
Deletion Chr2 19686776 19686777 1
Deletion Chr4 20779174 20779185 11
Deletion Chr3 33004179 33004193 14

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8456384 8456388 3
Insertion Chr2 27771878 27771883 4
Insertion Chr6 16647037 16647040 2
Insertion Chr8 24964923 24964926 2
Insertion Chr11 27529335 27529338 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18093694 18288432
Inversion Chr6 18093706 18288433
Inversion Chr2 23676753 23677886
Inversion Chr2 23676763 23677891
Inversion Chr3 24966029 25115434 OsKitaake03g265500
Inversion Chr3 24966038 25115440 OsKitaake03g265500
Inversion Chr1 33795708 33897902 OsKitaake01g347200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 9671860 Chr3 25089974

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3135530	T-A	Hetero	INTERGENIC
SBS	Chr1	20895827	A-G	Hetero	INTERGENIC
SBS	Chr1	43981374	C-A	Homo	INTERGENIC
SBS	Chr2	24652347	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	29167379	C-A	Homo	INTERGENIC
SBS	Chr3	1092498	T-A	Hetero	INTRON
SBS	Chr3	14301478	A-T	Hetero	INTERGENIC
SBS	Chr3	17968493	A-T	Homo	INTERGENIC
SBS	Chr3	17968495	C-A	Homo	INTERGENIC
SBS	Chr3	24698253	G-T	Hetero	INTERGENIC
SBS	Chr4	9087722	C-T	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Hetero	INTERGENIC
SBS	Chr5	10325538	G-A	Hetero	INTERGENIC
SBS	Chr5	14390272	C-T	Hetero	INTERGENIC
SBS	Chr5	14758438	A-G	Hetero	INTERGENIC
SBS	Chr6	21843290	C-T	Hetero	INTERGENIC
SBS	Chr7	27957051	T-A	Homo	INTERGENIC
SBS	Chr8	9753035	C-T	Hetero	INTERGENIC
SBS	Chr9	2162045	C-T	Hetero	INTERGENIC
SBS	Chr9	3312816	C-T	Hetero	INTERGENIC
SBS	Chr10	2604246	G-A	Hetero	INTERGENIC
SBS	Chr10	14264710	G-A	Hetero	INTERGENIC
SBS	Chr10	16527681	T-A	Hetero	INTERGENIC
SBS	Chr11	8328036	C-T	Hetero	INTERGENIC
SBS	Chr11	11188166	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g107400
SBS	Chr11	18011612	C-A	Hetero	INTERGENIC
SBS	Chr11	18011613	G-T	Hetero	INTERGENIC
SBS	Chr12	17845981	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2379986	2379987	1
Deletion	Chr2	3004079	3004080	1	OsKitaake02g042851
Deletion	Chr12	3359106	3359108	2
Deletion	Chr3	4533236	4533238	2	OsKitaake03g065300
Deletion	Chr2	4588921	4588956	35
Deletion	Chr8	7129966	7129970	4
Deletion	Chr11	9284001	9414000	129999	13
Deletion	Chr7	12049680	12049685	5
Deletion	Chr12	12104754	12104765	11
Deletion	Chr1	18491782	18491790	8	OsKitaake01g185600
Deletion	Chr2	19686776	19686777	1
Deletion	Chr4	20779174	20779185	11
Deletion	Chr3	33004179	33004193	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18093694	18288432
Inversion	Chr6	18093706	18288433
Inversion	Chr2	23676753	23677886
Inversion	Chr2	23676763	23677891
Inversion	Chr3	24966029	25115434	OsKitaake03g265500
Inversion	Chr3	24966038	25115440	OsKitaake03g265500
Inversion	Chr1	33795708	33897902	OsKitaake01g347200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes