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Mutant Information

Mutant Name	FN3491-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3491-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10833959 G-A Hetero INTERGENIC
SBS Chr1 21914466 A-G Hetero INTERGENIC
SBS Chr1 25130291 C-T Hetero INTERGENIC
SBS Chr1 37745283 A-G Hetero INTERGENIC
SBS Chr2 7959689 G-A Homo INTERGENIC
SBS Chr2 24136935 C-T Homo INTRON
SBS Chr3 13256810 G-T Hetero INTERGENIC
SBS Chr3 20820835 C-T Hetero INTERGENIC
SBS Chr3 23713010 G-A Hetero INTERGENIC
SBS Chr4 14516660 T-A Homo INTERGENIC
SBS Chr4 18641555 G-A Homo INTERGENIC
SBS Chr4 33146575 T-A Hetero INTERGENIC
SBS Chr5 482690 C-A Hetero INTERGENIC
SBS Chr7 9344554 C-T Hetero INTERGENIC
SBS Chr7 24701584 A-T Homo INTERGENIC
SBS Chr9 1154202 C-G Hetero INTERGENIC
SBS Chr9 8386309 G-A Homo INTERGENIC
SBS Chr10 1914221 C-T Hetero INTERGENIC
SBS Chr10 6451118 C-A Hetero INTRON
SBS Chr11 668721 A-T Homo INTRON
SBS Chr11 12299976 G-A Homo INTERGENIC
SBS Chr11 15582199 G-T Hetero INTERGENIC
SBS Chr12 1479795 G-A Homo INTRON
SBS Chr12 2616873 C-A Homo INTERGENIC
SBS Chr12 7073492 C-T Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1347710 1347712 2
Deletion Chr3 1420289 1420300 11
Deletion Chr8 2515010 2515011 1
Deletion Chr5 6243554 6243555 1
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr4 12294756 12294757 1
Deletion Chr9 15199090 15199102 12 OsKitaake09g106100
Deletion Chr4 16881001 16928000 46999 2
Deletion Chr4 18653325 18653331 6
Deletion Chr2 18818669 18818689 20
Deletion Chr4 19433001 19448000 14999 OsKitaake04g099601
Deletion Chr4 30765001 30777000 11999 OsKitaake04g237700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29338987 29338994 6
Insertion Chr3 14519147 14519150 2
Insertion Chr10 12686127 12686130 2
Insertion Chr1 40458622 40458644 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10833959	G-A	Hetero	INTERGENIC
SBS	Chr1	21914466	A-G	Hetero	INTERGENIC
SBS	Chr1	25130291	C-T	Hetero	INTERGENIC
SBS	Chr1	37745283	A-G	Hetero	INTERGENIC
SBS	Chr2	7959689	G-A	Homo	INTERGENIC
SBS	Chr2	24136935	C-T	Homo	INTRON
SBS	Chr3	13256810	G-T	Hetero	INTERGENIC
SBS	Chr3	20820835	C-T	Hetero	INTERGENIC
SBS	Chr3	23713010	G-A	Hetero	INTERGENIC
SBS	Chr4	14516660	T-A	Homo	INTERGENIC
SBS	Chr4	18641555	G-A	Homo	INTERGENIC
SBS	Chr4	33146575	T-A	Hetero	INTERGENIC
SBS	Chr5	482690	C-A	Hetero	INTERGENIC
SBS	Chr7	9344554	C-T	Hetero	INTERGENIC
SBS	Chr7	24701584	A-T	Homo	INTERGENIC
SBS	Chr9	1154202	C-G	Hetero	INTERGENIC
SBS	Chr9	8386309	G-A	Homo	INTERGENIC
SBS	Chr10	1914221	C-T	Hetero	INTERGENIC
SBS	Chr10	6451118	C-A	Hetero	INTRON
SBS	Chr11	668721	A-T	Homo	INTRON
SBS	Chr11	12299976	G-A	Homo	INTERGENIC
SBS	Chr11	15582199	G-T	Hetero	INTERGENIC
SBS	Chr12	1479795	G-A	Homo	INTRON
SBS	Chr12	2616873	C-A	Homo	INTERGENIC
SBS	Chr12	7073492	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1347710	1347712	2
Deletion	Chr3	1420289	1420300	11
Deletion	Chr8	2515010	2515011	1
Deletion	Chr5	6243554	6243555	1
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr4	12294756	12294757	1
Deletion	Chr9	15199090	15199102	12	OsKitaake09g106100
Deletion	Chr4	16881001	16928000	46999	2
Deletion	Chr4	18653325	18653331	6
Deletion	Chr2	18818669	18818689	20
Deletion	Chr4	19433001	19448000	14999	OsKitaake04g099601
Deletion	Chr4	30765001	30777000	11999	OsKitaake04g237700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes