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Mutant Information

Mutant Name	FN3493-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3493-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 522149 G-A Hetero INTERGENIC
SBS Chr1 17739144 A-G Hetero INTERGENIC
SBS Chr1 19799177 G-A Hetero INTERGENIC
SBS Chr2 3091341 C-T Hetero INTERGENIC
SBS Chr2 26180192 G-C Hetero INTRON
SBS Chr2 26698655 C-T Hetero INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 28366468 G-A Hetero INTERGENIC
SBS Chr2 36693910 G-T Hetero INTERGENIC
SBS Chr3 8996379 A-G Hetero INTERGENIC
SBS Chr4 1843097 T-C Hetero INTERGENIC
SBS Chr4 5855169 G-A Hetero UTR_3_PRIME
SBS Chr4 14804374 T-G Homo INTERGENIC
SBS Chr5 29488084 G-A Hetero INTERGENIC
SBS Chr6 1769577 G-A Hetero UTR_3_PRIME
SBS Chr7 11199781 G-A Hetero INTRON
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 28190440 C-G Hetero UTR_5_PRIME
SBS Chr8 5113077 T-G Homo INTERGENIC
SBS Chr8 20348455 C-A Hetero INTRON
SBS Chr9 8311378 G-A Homo INTERGENIC
SBS Chr9 18549514 A-T Hetero INTERGENIC
SBS Chr10 5205977 A-G Hetero INTERGENIC
SBS Chr10 6244248 C-T Hetero INTERGENIC
SBS Chr10 6509491 C-T Hetero INTERGENIC
SBS Chr11 4469843 G-A Homo INTERGENIC
SBS Chr11 4469844 A-G Homo INTERGENIC
SBS Chr11 5100613 T-C Homo INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 15464298 C-G Hetero INTERGENIC
SBS Chr11 18104848 C-T Homo INTERGENIC
SBS Chr11 21513286 T-C Homo INTERGENIC
SBS Chr11 26252074 G-A Hetero INTERGENIC
SBS Chr12 3015032 G-A Hetero INTERGENIC
SBS Chr12 15089358 C-T Hetero INTERGENIC
SBS Chr12 23138058 C-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2600578 2600591 13
Deletion Chr11 3165790 3165791 1
Deletion Chr2 3275834 3275840 6
Deletion Chr7 3396064 3396073 9
Deletion Chr11 5178130 5178134 4
Deletion Chr12 5684850 5684856 6
Deletion Chr7 7376080 7376089 9
Deletion Chr1 8698001 8739000 40999 6
Deletion Chr4 8954698 8954700 2
Deletion Chr10 9612022 9612033 11
Deletion Chr12 9705001 10184000 478999 23
Deletion Chr3 9883356 9883368 12
Deletion Chr1 12392787 12392797 10
Deletion Chr5 16204975 16204976 1
Deletion Chr5 23068127 23068134 7
Deletion Chr1 23454975 23454976 1
Deletion Chr5 23510001 23518000 7999
Deletion Chr2 26655001 26691000 35999 5
Deletion Chr3 28908194 28908208 14

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27121662 27121667 4
Insertion Chr9 19668113 19668116 2
Insertion Chr8 7462609 7462611 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5320663 5322787
Inversion Chr5 23517947 24380996

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9701414 Chr5 15131160
Translocation Chr12 9703112 Chr5 15131172

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	522149	G-A	Hetero	INTERGENIC
SBS	Chr1	17739144	A-G	Hetero	INTERGENIC
SBS	Chr1	19799177	G-A	Hetero	INTERGENIC
SBS	Chr2	3091341	C-T	Hetero	INTERGENIC
SBS	Chr2	26180192	G-C	Hetero	INTRON
SBS	Chr2	26698655	C-T	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	28366468	G-A	Hetero	INTERGENIC
SBS	Chr2	36693910	G-T	Hetero	INTERGENIC
SBS	Chr3	8996379	A-G	Hetero	INTERGENIC
SBS	Chr4	1843097	T-C	Hetero	INTERGENIC
SBS	Chr4	5855169	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14804374	T-G	Homo	INTERGENIC
SBS	Chr5	29488084	G-A	Hetero	INTERGENIC
SBS	Chr6	1769577	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	11199781	G-A	Hetero	INTRON
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	28190440	C-G	Hetero	UTR_5_PRIME
SBS	Chr8	5113077	T-G	Homo	INTERGENIC
SBS	Chr8	20348455	C-A	Hetero	INTRON
SBS	Chr9	8311378	G-A	Homo	INTERGENIC
SBS	Chr9	18549514	A-T	Hetero	INTERGENIC
SBS	Chr10	5205977	A-G	Hetero	INTERGENIC
SBS	Chr10	6244248	C-T	Hetero	INTERGENIC
SBS	Chr10	6509491	C-T	Hetero	INTERGENIC
SBS	Chr11	4469843	G-A	Homo	INTERGENIC
SBS	Chr11	4469844	A-G	Homo	INTERGENIC
SBS	Chr11	5100613	T-C	Homo	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	15464298	C-G	Hetero	INTERGENIC
SBS	Chr11	18104848	C-T	Homo	INTERGENIC
SBS	Chr11	21513286	T-C	Homo	INTERGENIC
SBS	Chr11	26252074	G-A	Hetero	INTERGENIC
SBS	Chr12	3015032	G-A	Hetero	INTERGENIC
SBS	Chr12	15089358	C-T	Hetero	INTERGENIC
SBS	Chr12	23138058	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2600578	2600591	13
Deletion	Chr11	3165790	3165791	1
Deletion	Chr2	3275834	3275840	6
Deletion	Chr7	3396064	3396073	9
Deletion	Chr11	5178130	5178134	4
Deletion	Chr12	5684850	5684856	6
Deletion	Chr7	7376080	7376089	9
Deletion	Chr1	8698001	8739000	40999	6
Deletion	Chr4	8954698	8954700	2
Deletion	Chr10	9612022	9612033	11
Deletion	Chr12	9705001	10184000	478999	23
Deletion	Chr3	9883356	9883368	12
Deletion	Chr1	12392787	12392797	10
Deletion	Chr5	16204975	16204976	1
Deletion	Chr5	23068127	23068134	7
Deletion	Chr1	23454975	23454976	1
Deletion	Chr5	23510001	23518000	7999
Deletion	Chr2	26655001	26691000	35999	5
Deletion	Chr3	28908194	28908208	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5320663	5322787
Inversion	Chr5	23517947	24380996

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes