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Mutant Information

Mutant Name	FN3494-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3494-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15254224 T-A Hetero INTERGENIC
SBS Chr1 22880368 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g217800
SBS Chr1 37595848 G-A Hetero INTERGENIC
SBS Chr2 9503616 C-T Hetero INTERGENIC
SBS Chr2 9717045 G-C Hetero INTERGENIC
SBS Chr2 14652010 T-A Hetero INTERGENIC
SBS Chr2 19077633 A-G Homo INTERGENIC
SBS Chr2 29360942 T-C Homo INTERGENIC
SBS Chr2 36454841 C-T Hetero INTERGENIC
SBS Chr3 6532742 T-A Hetero INTRON
SBS Chr3 8393149 G-A Hetero INTRON
SBS Chr3 9604334 C-T Hetero INTERGENIC
SBS Chr3 13022185 C-T Homo INTERGENIC
SBS Chr3 14420281 G-T Homo INTRON
SBS Chr3 22489238 G-A Hetero INTERGENIC
SBS Chr4 3383998 G-T Hetero INTERGENIC
SBS Chr4 6156329 G-A Hetero INTERGENIC
SBS Chr4 6892459 G-A Hetero INTERGENIC
SBS Chr4 8558363 G-A Hetero INTERGENIC
SBS Chr4 27425301 C-T Homo INTRON
SBS Chr4 30238424 T-G Homo INTERGENIC
SBS Chr5 5818487 C-T Hetero INTERGENIC
SBS Chr5 5911968 G-A Homo INTERGENIC
SBS Chr5 15085472 A-G Homo INTERGENIC
SBS Chr5 22040700 G-A Hetero INTERGENIC
SBS Chr6 4069073 T-A Homo INTERGENIC
SBS Chr6 14671822 G-A Homo INTERGENIC
SBS Chr6 28669956 G-A Hetero INTERGENIC
SBS Chr7 300084 G-T Hetero INTERGENIC
SBS Chr7 9706137 G-A Hetero INTERGENIC
SBS Chr7 27967998 G-A Hetero INTERGENIC
SBS Chr8 9323676 G-C Homo INTERGENIC
SBS Chr8 28371334 G-A Hetero INTERGENIC
SBS Chr9 9495732 T-A Homo INTERGENIC
SBS Chr9 9922736 A-G Homo INTERGENIC
SBS Chr10 4956319 C-T Hetero INTERGENIC
SBS Chr10 11095290 G-A Hetero INTERGENIC
SBS Chr10 15311160 A-G Hetero INTRON
SBS Chr10 19583106 A-G Hetero INTERGENIC
SBS Chr11 1244761 G-A Hetero INTERGENIC
SBS Chr11 19594288 T-A Homo INTERGENIC
SBS Chr11 21701224 C-T Hetero INTERGENIC
SBS Chr12 9157526 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1058146 1058148 2
Deletion Chr3 2523001 2538000 14999 2
Deletion Chr6 6375192 6375194 2
Deletion Chr4 8787706 8787707 1
Deletion Chr3 10702399 10702403 4
Deletion Chr11 11180988 11180990 2
Deletion Chr1 11228240 11228241 1 OsKitaake01g137700
Deletion Chr6 11797220 11797242 22
Deletion Chr5 16824104 16824120 16
Deletion Chr10 17250053 17250065 12
Deletion Chr4 19310192 19310199 7
Deletion Chr1 26426725 26426726 1
Deletion Chr4 27611816 27611819 3
Deletion Chr2 28286428 28286429 1
Deletion Chr1 29208417 29208422 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11160251 11160255 3
Insertion Chr7 22134446 22134449 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 8028416 8515598
Inversion Chr1 8028488 8515605

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15254224	T-A	Hetero	INTERGENIC
SBS	Chr1	22880368	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g217800
SBS	Chr1	37595848	G-A	Hetero	INTERGENIC
SBS	Chr2	9503616	C-T	Hetero	INTERGENIC
SBS	Chr2	9717045	G-C	Hetero	INTERGENIC
SBS	Chr2	14652010	T-A	Hetero	INTERGENIC
SBS	Chr2	19077633	A-G	Homo	INTERGENIC
SBS	Chr2	29360942	T-C	Homo	INTERGENIC
SBS	Chr2	36454841	C-T	Hetero	INTERGENIC
SBS	Chr3	6532742	T-A	Hetero	INTRON
SBS	Chr3	8393149	G-A	Hetero	INTRON
SBS	Chr3	9604334	C-T	Hetero	INTERGENIC
SBS	Chr3	13022185	C-T	Homo	INTERGENIC
SBS	Chr3	14420281	G-T	Homo	INTRON
SBS	Chr3	22489238	G-A	Hetero	INTERGENIC
SBS	Chr4	3383998	G-T	Hetero	INTERGENIC
SBS	Chr4	6156329	G-A	Hetero	INTERGENIC
SBS	Chr4	6892459	G-A	Hetero	INTERGENIC
SBS	Chr4	8558363	G-A	Hetero	INTERGENIC
SBS	Chr4	27425301	C-T	Homo	INTRON
SBS	Chr4	30238424	T-G	Homo	INTERGENIC
SBS	Chr5	5818487	C-T	Hetero	INTERGENIC
SBS	Chr5	5911968	G-A	Homo	INTERGENIC
SBS	Chr5	15085472	A-G	Homo	INTERGENIC
SBS	Chr5	22040700	G-A	Hetero	INTERGENIC
SBS	Chr6	4069073	T-A	Homo	INTERGENIC
SBS	Chr6	14671822	G-A	Homo	INTERGENIC
SBS	Chr6	28669956	G-A	Hetero	INTERGENIC
SBS	Chr7	300084	G-T	Hetero	INTERGENIC
SBS	Chr7	9706137	G-A	Hetero	INTERGENIC
SBS	Chr7	27967998	G-A	Hetero	INTERGENIC
SBS	Chr8	9323676	G-C	Homo	INTERGENIC
SBS	Chr8	28371334	G-A	Hetero	INTERGENIC
SBS	Chr9	9495732	T-A	Homo	INTERGENIC
SBS	Chr9	9922736	A-G	Homo	INTERGENIC
SBS	Chr10	4956319	C-T	Hetero	INTERGENIC
SBS	Chr10	11095290	G-A	Hetero	INTERGENIC
SBS	Chr10	15311160	A-G	Hetero	INTRON
SBS	Chr10	19583106	A-G	Hetero	INTERGENIC
SBS	Chr11	1244761	G-A	Hetero	INTERGENIC
SBS	Chr11	19594288	T-A	Homo	INTERGENIC
SBS	Chr11	21701224	C-T	Hetero	INTERGENIC
SBS	Chr12	9157526	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1058146	1058148	2
Deletion	Chr3	2523001	2538000	14999	2
Deletion	Chr6	6375192	6375194	2
Deletion	Chr4	8787706	8787707	1
Deletion	Chr3	10702399	10702403	4
Deletion	Chr11	11180988	11180990	2
Deletion	Chr1	11228240	11228241	1	OsKitaake01g137700
Deletion	Chr6	11797220	11797242	22
Deletion	Chr5	16824104	16824120	16
Deletion	Chr10	17250053	17250065	12
Deletion	Chr4	19310192	19310199	7
Deletion	Chr1	26426725	26426726	1
Deletion	Chr4	27611816	27611819	3
Deletion	Chr2	28286428	28286429	1
Deletion	Chr1	29208417	29208422	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8028416	8515598
Inversion	Chr1	8028488	8515605

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes