Search Kitaake

Mutant Information

Mutant Name	FN3495-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3495-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 557297 A-G Hetero INTERGENIC
SBS Chr1 31265599 A-G Hetero INTRON
SBS Chr1 41212876 C-T Hetero SPLICE_SITE_REGION
SBS Chr2 3652809 G-A Hetero INTERGENIC
SBS Chr3 276750 T-G Hetero INTERGENIC
SBS Chr3 25408517 G-T Homo INTERGENIC
SBS Chr3 25567444 A-G Hetero INTERGENIC
SBS Chr3 25584626 G-A Homo INTERGENIC
SBS Chr3 26801023 G-T Homo INTERGENIC
SBS Chr4 20185541 C-G Hetero INTERGENIC
SBS Chr4 34097410 C-T Hetero INTERGENIC
SBS Chr4 35028457 A-G Homo INTERGENIC
SBS Chr5 5814583 A-C Hetero INTERGENIC
SBS Chr5 14847610 G-C Hetero INTERGENIC
SBS Chr5 16769083 T-A Hetero INTERGENIC
SBS Chr6 10814353 C-T Homo INTERGENIC
SBS Chr8 302554 A-G Homo INTERGENIC
SBS Chr8 4167429 T-C Homo UTR_3_PRIME
SBS Chr8 27202823 T-C Hetero INTRON
SBS Chr8 27328216 G-C Hetero INTRON
SBS Chr9 602834 C-A Hetero INTERGENIC
SBS Chr9 5797867 C-A Hetero INTERGENIC
SBS Chr9 18310839 C-G Homo INTERGENIC
SBS Chr9 18628463 C-T Homo INTERGENIC
SBS Chr10 20829177 C-T Homo INTERGENIC
SBS Chr11 1489942 C-A Homo INTERGENIC
SBS Chr11 12965584 G-C Homo INTERGENIC
SBS Chr12 8149018 A-C Hetero INTERGENIC
SBS Chr12 14432178 T-C Hetero INTERGENIC
SBS Chr12 18134519 C-A Hetero INTRON
SBS Chr12 24748905 T-A Homo INTERGENIC

Deletions: 37

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1369001 1381000 11999 OsKitaake05g017100
Deletion Chr9 5262001 5758000 495999 25
Deletion Chr3 6095001 6102000 6999 OsKitaake03g087400
Deletion Chr6 6148001 6154000 5999 OsKitaake06g080800
Deletion Chr10 6318138 6318143 5
Deletion Chr7 6715383 6715399 16
Deletion Chr7 9877066 9877086 20
Deletion Chr8 11429001 11439000 9999 OsKitaake08g101301
Deletion Chr8 12534001 12543000 8999 OsKitaake08g107500
Deletion Chr5 12890349 12890354 5
Deletion Chr6 12985662 12985663 1
Deletion Chr1 13457001 13471000 13999 2
Deletion Chr4 14383818 14383824 6
Deletion Chr5 16553001 16589000 35999 2
Deletion Chr7 18129771 18129776 5
Deletion Chr9 18309314 18309324 10
Deletion Chr10 18474642 18474644 2
Deletion Chr10 19375001 19386000 10999 OsKitaake10g141100
Deletion Chr8 21047247 21047257 10
Deletion Chr8 21298001 21309000 10999 OsKitaake08g159900
Deletion Chr1 21788083 21788089 6
Deletion Chr1 23252001 23267000 14999 OsKitaake01g222400
Deletion Chr2 24411001 24430000 18999
Deletion Chr4 24462001 24473000 10999
Deletion Chr3 25514506 25514519 13
Deletion Chr2 25728881 25728890 9
Deletion Chr1 25839117 25839121 4
Deletion Chr8 26354001 26368000 13999 2
Deletion Chr6 27921001 27935000 13999 OsKitaake06g253400
Deletion Chr3 27998001 28010000 11999 OsKitaake03g289900
Deletion Chr5 28137442 28137465 23 OsKitaake05g260300
Deletion Chr1 29427008 29427010 2
Deletion Chr1 30448001 30466000 17999 OsKitaake01g301100
Deletion Chr4 31560103 31560115 12 OsKitaake04g248400
Deletion Chr4 31747833 31747850 17
Deletion Chr3 31965051 31965054 3 OsKitaake03g338200
Deletion Chr1 42302001 42317000 14999 OsKitaake01g466400

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 642505 642508 2
Insertion Chr6 19245484 19245486 1 OsKitaake06g173900
Insertion Chr9 12437032 12437036 3
Insertion Chr9 14509920 14509923 2
Insertion Chr12 24724356 24724359 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3290939 Chr3 21062167
Translocation Chr9 3291104 Chr3 21062174
Translocation Chr11 7188220 Chr1 44088208 OsKitaake01g491850
Translocation Chr11 8676016 Chr1 44088981 OsKitaake01g491850
Translocation Chr5 16686452 Chr4 12496463 OsKitaake05g127500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	557297	A-G	Hetero	INTERGENIC
SBS	Chr1	31265599	A-G	Hetero	INTRON
SBS	Chr1	41212876	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr2	3652809	G-A	Hetero	INTERGENIC
SBS	Chr3	276750	T-G	Hetero	INTERGENIC
SBS	Chr3	25408517	G-T	Homo	INTERGENIC
SBS	Chr3	25567444	A-G	Hetero	INTERGENIC
SBS	Chr3	25584626	G-A	Homo	INTERGENIC
SBS	Chr3	26801023	G-T	Homo	INTERGENIC
SBS	Chr4	20185541	C-G	Hetero	INTERGENIC
SBS	Chr4	34097410	C-T	Hetero	INTERGENIC
SBS	Chr4	35028457	A-G	Homo	INTERGENIC
SBS	Chr5	5814583	A-C	Hetero	INTERGENIC
SBS	Chr5	14847610	G-C	Hetero	INTERGENIC
SBS	Chr5	16769083	T-A	Hetero	INTERGENIC
SBS	Chr6	10814353	C-T	Homo	INTERGENIC
SBS	Chr8	302554	A-G	Homo	INTERGENIC
SBS	Chr8	4167429	T-C	Homo	UTR_3_PRIME
SBS	Chr8	27202823	T-C	Hetero	INTRON
SBS	Chr8	27328216	G-C	Hetero	INTRON
SBS	Chr9	602834	C-A	Hetero	INTERGENIC
SBS	Chr9	5797867	C-A	Hetero	INTERGENIC
SBS	Chr9	18310839	C-G	Homo	INTERGENIC
SBS	Chr9	18628463	C-T	Homo	INTERGENIC
SBS	Chr10	20829177	C-T	Homo	INTERGENIC
SBS	Chr11	1489942	C-A	Homo	INTERGENIC
SBS	Chr11	12965584	G-C	Homo	INTERGENIC
SBS	Chr12	8149018	A-C	Hetero	INTERGENIC
SBS	Chr12	14432178	T-C	Hetero	INTERGENIC
SBS	Chr12	18134519	C-A	Hetero	INTRON
SBS	Chr12	24748905	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1369001	1381000	11999	OsKitaake05g017100
Deletion	Chr9	5262001	5758000	495999	25
Deletion	Chr3	6095001	6102000	6999	OsKitaake03g087400
Deletion	Chr6	6148001	6154000	5999	OsKitaake06g080800
Deletion	Chr10	6318138	6318143	5
Deletion	Chr7	6715383	6715399	16
Deletion	Chr7	9877066	9877086	20
Deletion	Chr8	11429001	11439000	9999	OsKitaake08g101301
Deletion	Chr8	12534001	12543000	8999	OsKitaake08g107500
Deletion	Chr5	12890349	12890354	5
Deletion	Chr6	12985662	12985663	1
Deletion	Chr1	13457001	13471000	13999	2
Deletion	Chr4	14383818	14383824	6
Deletion	Chr5	16553001	16589000	35999	2
Deletion	Chr7	18129771	18129776	5
Deletion	Chr9	18309314	18309324	10
Deletion	Chr10	18474642	18474644	2
Deletion	Chr10	19375001	19386000	10999	OsKitaake10g141100
Deletion	Chr8	21047247	21047257	10
Deletion	Chr8	21298001	21309000	10999	OsKitaake08g159900
Deletion	Chr1	21788083	21788089	6
Deletion	Chr1	23252001	23267000	14999	OsKitaake01g222400
Deletion	Chr2	24411001	24430000	18999
Deletion	Chr4	24462001	24473000	10999
Deletion	Chr3	25514506	25514519	13
Deletion	Chr2	25728881	25728890	9
Deletion	Chr1	25839117	25839121	4
Deletion	Chr8	26354001	26368000	13999	2
Deletion	Chr6	27921001	27935000	13999	OsKitaake06g253400
Deletion	Chr3	27998001	28010000	11999	OsKitaake03g289900
Deletion	Chr5	28137442	28137465	23	OsKitaake05g260300
Deletion	Chr1	29427008	29427010	2
Deletion	Chr1	30448001	30466000	17999	OsKitaake01g301100
Deletion	Chr4	31560103	31560115	12	OsKitaake04g248400
Deletion	Chr4	31747833	31747850	17
Deletion	Chr3	31965051	31965054	3	OsKitaake03g338200
Deletion	Chr1	42302001	42317000	14999	OsKitaake01g466400

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3290939	Chr3	21062167
Translocation	Chr9	3291104	Chr3	21062174
Translocation	Chr11	7188220	Chr1	44088208	OsKitaake01g491850
Translocation	Chr11	8676016	Chr1	44088981	OsKitaake01g491850
Translocation	Chr5	16686452	Chr4	12496463	OsKitaake05g127500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes