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Mutant Information

Mutant Name	FN3496-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3496-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2953657 G-T Hetero INTERGENIC
SBS Chr1 12323362 A-T Homo INTERGENIC
SBS Chr1 14810726 C-T Homo INTERGENIC
SBS Chr1 16975123 G-A Hetero INTERGENIC
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 25311998 A-C Hetero INTERGENIC
SBS Chr1 30717971 T-C Hetero INTERGENIC
SBS Chr1 31744800 A-G Hetero INTERGENIC
SBS Chr1 32189633 A-C Hetero INTERGENIC
SBS Chr2 1022512 G-A Hetero INTERGENIC
SBS Chr2 13312036 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g147550
SBS Chr2 13549275 C-G Homo INTERGENIC
SBS Chr2 13753473 G-A Homo INTERGENIC
SBS Chr2 20602853 G-A Hetero INTERGENIC
SBS Chr2 25682365 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 29704521 G-A Homo INTERGENIC
SBS Chr3 3416626 G-A Hetero UTR_3_PRIME
SBS Chr3 20447094 A-G Hetero INTERGENIC
SBS Chr3 29447405 C-T Homo INTERGENIC
SBS Chr4 8512214 C-A Hetero INTERGENIC
SBS Chr4 9153909 A-G Homo INTERGENIC
SBS Chr5 6278348 C-T Hetero INTERGENIC
SBS Chr5 10320363 C-G Hetero INTERGENIC
SBS Chr6 23573998 A-G Homo INTERGENIC
SBS Chr7 26310025 T-A Homo INTERGENIC
SBS Chr7 27818558 T-A Homo INTRON
SBS Chr8 2184552 C-A Hetero INTERGENIC
SBS Chr8 5772451 C-T Homo UTR_3_PRIME
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr10 12149055 A-T Homo INTERGENIC
SBS Chr11 5348963 T-A Homo INTERGENIC
SBS Chr11 7836227 G-A Hetero INTERGENIC
SBS Chr12 24978341 A-G Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1367001 1382000 14999 OsKitaake05g017100
Deletion Chr1 2277558 2277566 8
Deletion Chr3 2522001 2539000 16999 2
Deletion Chr3 3441462 3441463 1
Deletion Chr9 6272001 6280000 7999 3
Deletion Chr12 6681143 6681145 2
Deletion Chr3 7515774 7515777 3
Deletion Chr6 7978428 7978434 6
Deletion Chr1 9645001 9660000 14999 OsKitaake01g123400
Deletion Chr1 13458001 13473000 14999 2
Deletion Chr2 15185891 15185895 4
Deletion Chr9 18231157 18231159 2 OsKitaake09g141100
Deletion Chr7 19274762 19274764 2
Deletion Chr4 21223302 21223303 1
Deletion Chr8 21297001 21311000 13999 OsKitaake08g159900
Deletion Chr10 22379732 22379733 1 OsKitaake10g183600
Deletion Chr3 22980001 22988000 7999
Deletion Chr10 23134001 23162000 27999 OsKitaake10g195250
Deletion Chr1 23253001 23269000 15999 OsKitaake01g222400
Deletion Chr2 24408001 24432000 23999
Deletion Chr4 24464001 24473000 8999
Deletion Chr6 27919001 27937000 17999 OsKitaake06g253400
Deletion Chr6 29196001 29204000 7999 2
Deletion Chr4 31549001 31558000 8999 OsKitaake04g248400
Deletion Chr1 42304001 42316000 11999 OsKitaake01g466400
Deletion Chr1 42700001 42712000 11999

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27344236 27344241 4
Insertion Chr5 4116684 4116687 2
Insertion Chr6 19139287 19139290 2
Insertion Chr8 6758453 6758456 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2953452 Chr5 27325390 OsKitaake05g247300
Translocation Chr10 2953459 Chr5 27321712 OsKitaake05g247300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2953657	G-T	Hetero	INTERGENIC
SBS	Chr1	12323362	A-T	Homo	INTERGENIC
SBS	Chr1	14810726	C-T	Homo	INTERGENIC
SBS	Chr1	16975123	G-A	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	25311998	A-C	Hetero	INTERGENIC
SBS	Chr1	30717971	T-C	Hetero	INTERGENIC
SBS	Chr1	31744800	A-G	Hetero	INTERGENIC
SBS	Chr1	32189633	A-C	Hetero	INTERGENIC
SBS	Chr2	1022512	G-A	Hetero	INTERGENIC
SBS	Chr2	13312036	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g147550
SBS	Chr2	13549275	C-G	Homo	INTERGENIC
SBS	Chr2	13753473	G-A	Homo	INTERGENIC
SBS	Chr2	20602853	G-A	Hetero	INTERGENIC
SBS	Chr2	25682365	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	29704521	G-A	Homo	INTERGENIC
SBS	Chr3	3416626	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	20447094	A-G	Hetero	INTERGENIC
SBS	Chr3	29447405	C-T	Homo	INTERGENIC
SBS	Chr4	8512214	C-A	Hetero	INTERGENIC
SBS	Chr4	9153909	A-G	Homo	INTERGENIC
SBS	Chr5	6278348	C-T	Hetero	INTERGENIC
SBS	Chr5	10320363	C-G	Hetero	INTERGENIC
SBS	Chr6	23573998	A-G	Homo	INTERGENIC
SBS	Chr7	26310025	T-A	Homo	INTERGENIC
SBS	Chr7	27818558	T-A	Homo	INTRON
SBS	Chr8	2184552	C-A	Hetero	INTERGENIC
SBS	Chr8	5772451	C-T	Homo	UTR_3_PRIME
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr10	12149055	A-T	Homo	INTERGENIC
SBS	Chr11	5348963	T-A	Homo	INTERGENIC
SBS	Chr11	7836227	G-A	Hetero	INTERGENIC
SBS	Chr12	24978341	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1367001	1382000	14999	OsKitaake05g017100
Deletion	Chr1	2277558	2277566	8
Deletion	Chr3	2522001	2539000	16999	2
Deletion	Chr3	3441462	3441463	1
Deletion	Chr9	6272001	6280000	7999	3
Deletion	Chr12	6681143	6681145	2
Deletion	Chr3	7515774	7515777	3
Deletion	Chr6	7978428	7978434	6
Deletion	Chr1	9645001	9660000	14999	OsKitaake01g123400
Deletion	Chr1	13458001	13473000	14999	2
Deletion	Chr2	15185891	15185895	4
Deletion	Chr9	18231157	18231159	2	OsKitaake09g141100
Deletion	Chr7	19274762	19274764	2
Deletion	Chr4	21223302	21223303	1
Deletion	Chr8	21297001	21311000	13999	OsKitaake08g159900
Deletion	Chr10	22379732	22379733	1	OsKitaake10g183600
Deletion	Chr3	22980001	22988000	7999
Deletion	Chr10	23134001	23162000	27999	OsKitaake10g195250
Deletion	Chr1	23253001	23269000	15999	OsKitaake01g222400
Deletion	Chr2	24408001	24432000	23999
Deletion	Chr4	24464001	24473000	8999
Deletion	Chr6	27919001	27937000	17999	OsKitaake06g253400
Deletion	Chr6	29196001	29204000	7999	2
Deletion	Chr4	31549001	31558000	8999	OsKitaake04g248400
Deletion	Chr1	42304001	42316000	11999	OsKitaake01g466400
Deletion	Chr1	42700001	42712000	11999

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2953452	Chr5	27325390	OsKitaake05g247300
Translocation	Chr10	2953459	Chr5	27321712	OsKitaake05g247300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes