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Mutant Information

Mutant Name	FN3499-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3499-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15237482 G-A Homo INTRON
SBS Chr1 22783987 C-T Hetero INTERGENIC
SBS Chr2 6169633 A-T Homo INTRON
SBS Chr2 24987559 G-C Hetero INTERGENIC
SBS Chr2 35802391 G-C Hetero INTERGENIC
SBS Chr3 8578281 A-G Hetero INTRON
SBS Chr3 9131680 G-A Hetero INTERGENIC
SBS Chr3 10169575 G-T Hetero INTRON
SBS Chr3 17487886 G-T Hetero UTR_5_PRIME
SBS Chr3 17487887 A-C Hetero UTR_5_PRIME
SBS Chr3 22421970 C-T Hetero INTERGENIC
SBS Chr4 10367151 C-T Hetero INTERGENIC
SBS Chr4 22486077 C-G Homo INTRON
SBS Chr5 6898980 G-C Hetero INTERGENIC
SBS Chr5 21570324 A-G Hetero INTRON
SBS Chr6 10632662 G-T Hetero STOP_GAINED OsKitaake06g119501
SBS Chr6 12219765 G-A Hetero UTR_3_PRIME
SBS Chr6 23922915 T-C Hetero INTERGENIC
SBS Chr7 5199662 T-C Homo INTERGENIC
SBS Chr8 5312548 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g057600
SBS Chr8 18828240 C-T Homo UTR_3_PRIME
SBS Chr9 12748445 G-A Hetero INTERGENIC
SBS Chr10 14831014 A-T Hetero INTERGENIC
SBS Chr11 1848275 T-A Homo INTERGENIC
SBS Chr11 3544341 T-C Hetero INTRON
SBS Chr11 9994559 G-A Hetero INTERGENIC
SBS Chr11 15772802 A-G Hetero INTERGENIC
SBS Chr11 16553436 T-A Hetero INTRON
SBS Chr12 17018173 G-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1573830 1573831 1
Deletion Chr2 11681228 11681235 7
Deletion Chr2 11892064 11892066 2
Deletion Chr4 19537001 19697000 159999 16
Deletion Chr4 24769459 24769462 3
Deletion Chr5 25960451 25960454 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 3466063 3466065 1
Insertion Chr6 5682607 5682611 3
Insertion Chr11 8455365 8455367 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 19103254 19542163 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 19103258 Chr2 16103083 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15237482	G-A	Homo	INTRON
SBS	Chr1	22783987	C-T	Hetero	INTERGENIC
SBS	Chr2	6169633	A-T	Homo	INTRON
SBS	Chr2	24987559	G-C	Hetero	INTERGENIC
SBS	Chr2	35802391	G-C	Hetero	INTERGENIC
SBS	Chr3	8578281	A-G	Hetero	INTRON
SBS	Chr3	9131680	G-A	Hetero	INTERGENIC
SBS	Chr3	10169575	G-T	Hetero	INTRON
SBS	Chr3	17487886	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	17487887	A-C	Hetero	UTR_5_PRIME
SBS	Chr3	22421970	C-T	Hetero	INTERGENIC
SBS	Chr4	10367151	C-T	Hetero	INTERGENIC
SBS	Chr4	22486077	C-G	Homo	INTRON
SBS	Chr5	6898980	G-C	Hetero	INTERGENIC
SBS	Chr5	21570324	A-G	Hetero	INTRON
SBS	Chr6	10632662	G-T	Hetero	STOP_GAINED	OsKitaake06g119501
SBS	Chr6	12219765	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	23922915	T-C	Hetero	INTERGENIC
SBS	Chr7	5199662	T-C	Homo	INTERGENIC
SBS	Chr8	5312548	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g057600
SBS	Chr8	18828240	C-T	Homo	UTR_3_PRIME
SBS	Chr9	12748445	G-A	Hetero	INTERGENIC
SBS	Chr10	14831014	A-T	Hetero	INTERGENIC
SBS	Chr11	1848275	T-A	Homo	INTERGENIC
SBS	Chr11	3544341	T-C	Hetero	INTRON
SBS	Chr11	9994559	G-A	Hetero	INTERGENIC
SBS	Chr11	15772802	A-G	Hetero	INTERGENIC
SBS	Chr11	16553436	T-A	Hetero	INTRON
SBS	Chr12	17018173	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1573830	1573831	1
Deletion	Chr2	11681228	11681235	7
Deletion	Chr2	11892064	11892066	2
Deletion	Chr4	19537001	19697000	159999	16
Deletion	Chr4	24769459	24769462	3
Deletion	Chr5	25960451	25960454	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19103254	19542163	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes