Search Kitaake

Mutant Information

Mutant Name	FN3500-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3500-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2297543 C-T Hetero INTERGENIC
SBS Chr1 27370684 T-A Homo INTERGENIC
SBS Chr1 27370685 G-A Homo INTERGENIC
SBS Chr1 27370686 G-A Homo INTERGENIC
SBS Chr1 29311589 T-A Homo INTERGENIC
SBS Chr1 31008027 T-G Hetero INTERGENIC
SBS Chr1 36156013 T-G Hetero INTERGENIC
SBS Chr2 5594922 A-T Hetero UTR_3_PRIME
SBS Chr2 25667913 C-T Hetero INTERGENIC
SBS Chr2 32441724 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g331800
SBS Chr2 35505042 C-T Homo INTERGENIC
SBS Chr3 5976915 T-C Hetero INTERGENIC
SBS Chr3 23270927 T-A Hetero UTR_3_PRIME
SBS Chr3 35801963 C-G Homo INTERGENIC
SBS Chr4 31610118 A-G Hetero INTRON
SBS Chr5 28635957 G-A Homo INTERGENIC
SBS Chr5 29269627 C-T Hetero INTERGENIC
SBS Chr5 29298516 C-T Homo SYNONYMOUS_CODING
SBS Chr6 5458231 G-A Hetero INTERGENIC
SBS Chr6 8085037 G-T Hetero INTERGENIC
SBS Chr6 15564815 C-T Hetero INTERGENIC
SBS Chr6 22737836 C-A Hetero INTERGENIC
SBS Chr7 11007139 A-C Homo INTERGENIC
SBS Chr7 11580449 G-A Homo INTERGENIC
SBS Chr7 22618776 A-T Hetero INTERGENIC
SBS Chr7 27225928 T-A Hetero INTERGENIC
SBS Chr8 274156 T-A Hetero UTR_5_PRIME
SBS Chr8 8099849 C-T Hetero INTERGENIC
SBS Chr9 22454252 T-C Homo UTR_5_PRIME
SBS Chr10 2444430 G-C Hetero INTERGENIC
SBS Chr10 3071104 T-C Hetero INTERGENIC
SBS Chr10 3095991 C-A Hetero INTERGENIC
SBS Chr10 8492128 C-T Hetero INTERGENIC
SBS Chr10 15710570 C-T Hetero INTERGENIC
SBS Chr11 9653446 C-T Hetero INTERGENIC
SBS Chr11 11836589 C-G Hetero INTERGENIC
SBS Chr11 26512219 G-T Homo INTERGENIC
SBS Chr11 28746082 C-T Hetero INTERGENIC
SBS Chr12 2390922 C-A Hetero INTRON
SBS Chr12 3270258 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 264379 264380 1 OsKitaake05g003500
Deletion Chr1 7547092 7547096 4 OsKitaake01g094500
Deletion Chr2 8267236 8267245 9
Deletion Chr8 9517532 9517533 1
Deletion Chr3 10907661 10907663 2
Deletion Chr1 12215908 12215914 6
Deletion Chr3 12538001 12589000 50999 7
Deletion Chr2 13301541 13301542 1
Deletion Chr6 16258829 16258830 1
Deletion Chr3 17358936 17359015 79
Deletion Chr4 17851367 17851371 4
Deletion Chr9 21060780 21060784 4
Deletion Chr8 25204732 25204736 4
Deletion Chr12 26006684 26006690 6
Deletion Chr3 33557863 33557869 6
Deletion Chr1 35488459 35488463 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 5799981 5799983 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 28595809 29021533
Inversion Chr4 30798169 31294870 OsKitaake04g238100
Inversion Chr4 30798183 31294873 OsKitaake04g238100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2297543	C-T	Hetero	INTERGENIC
SBS	Chr1	27370684	T-A	Homo	INTERGENIC
SBS	Chr1	27370685	G-A	Homo	INTERGENIC
SBS	Chr1	27370686	G-A	Homo	INTERGENIC
SBS	Chr1	29311589	T-A	Homo	INTERGENIC
SBS	Chr1	31008027	T-G	Hetero	INTERGENIC
SBS	Chr1	36156013	T-G	Hetero	INTERGENIC
SBS	Chr2	5594922	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	25667913	C-T	Hetero	INTERGENIC
SBS	Chr2	32441724	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g331800
SBS	Chr2	35505042	C-T	Homo	INTERGENIC
SBS	Chr3	5976915	T-C	Hetero	INTERGENIC
SBS	Chr3	23270927	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	35801963	C-G	Homo	INTERGENIC
SBS	Chr4	31610118	A-G	Hetero	INTRON
SBS	Chr5	28635957	G-A	Homo	INTERGENIC
SBS	Chr5	29269627	C-T	Hetero	INTERGENIC
SBS	Chr5	29298516	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	5458231	G-A	Hetero	INTERGENIC
SBS	Chr6	8085037	G-T	Hetero	INTERGENIC
SBS	Chr6	15564815	C-T	Hetero	INTERGENIC
SBS	Chr6	22737836	C-A	Hetero	INTERGENIC
SBS	Chr7	11007139	A-C	Homo	INTERGENIC
SBS	Chr7	11580449	G-A	Homo	INTERGENIC
SBS	Chr7	22618776	A-T	Hetero	INTERGENIC
SBS	Chr7	27225928	T-A	Hetero	INTERGENIC
SBS	Chr8	274156	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	8099849	C-T	Hetero	INTERGENIC
SBS	Chr9	22454252	T-C	Homo	UTR_5_PRIME
SBS	Chr10	2444430	G-C	Hetero	INTERGENIC
SBS	Chr10	3071104	T-C	Hetero	INTERGENIC
SBS	Chr10	3095991	C-A	Hetero	INTERGENIC
SBS	Chr10	8492128	C-T	Hetero	INTERGENIC
SBS	Chr10	15710570	C-T	Hetero	INTERGENIC
SBS	Chr11	9653446	C-T	Hetero	INTERGENIC
SBS	Chr11	11836589	C-G	Hetero	INTERGENIC
SBS	Chr11	26512219	G-T	Homo	INTERGENIC
SBS	Chr11	28746082	C-T	Hetero	INTERGENIC
SBS	Chr12	2390922	C-A	Hetero	INTRON
SBS	Chr12	3270258	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	264379	264380	1	OsKitaake05g003500
Deletion	Chr1	7547092	7547096	4	OsKitaake01g094500
Deletion	Chr2	8267236	8267245	9
Deletion	Chr8	9517532	9517533	1
Deletion	Chr3	10907661	10907663	2
Deletion	Chr1	12215908	12215914	6
Deletion	Chr3	12538001	12589000	50999	7
Deletion	Chr2	13301541	13301542	1
Deletion	Chr6	16258829	16258830	1
Deletion	Chr3	17358936	17359015	79
Deletion	Chr4	17851367	17851371	4
Deletion	Chr9	21060780	21060784	4
Deletion	Chr8	25204732	25204736	4
Deletion	Chr12	26006684	26006690	6
Deletion	Chr3	33557863	33557869	6
Deletion	Chr1	35488459	35488463	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	28595809	29021533
Inversion	Chr4	30798169	31294870	OsKitaake04g238100
Inversion	Chr4	30798183	31294873	OsKitaake04g238100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes