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Mutant Information

Mutant Name	FN3501-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3501-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40876252 A-G Hetero INTERGENIC
SBS Chr1 41298686 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 2483546 A-C Hetero INTERGENIC
SBS Chr2 18945067 T-A Hetero INTERGENIC
SBS Chr2 29984679 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g304300
SBS Chr2 31226392 A-C Hetero UTR_3_PRIME
SBS Chr3 18434133 C-A Homo INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 32949447 G-A Hetero INTERGENIC
SBS Chr6 19688157 C-A Hetero INTERGENIC
SBS Chr6 23894494 T-A Hetero UTR_5_PRIME
SBS Chr7 25283070 G-A Homo INTRON
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 12812839 T-A Hetero INTERGENIC
SBS Chr8 16099746 C-A Hetero INTERGENIC
SBS Chr9 13788364 A-G Homo INTRON
SBS Chr10 899812 C-T Hetero INTERGENIC
SBS Chr10 20080323 C-A Hetero INTERGENIC
SBS Chr11 6990912 T-G Hetero INTERGENIC
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr11 20170841 C-T Hetero INTERGENIC
SBS Chr11 28582840 A-G Homo NON_SYNONYMOUS_CODING OsKitaake11g234000
SBS Chr12 3880569 G-A Homo INTERGENIC
SBS Chr12 13521629 G-A Hetero INTERGENIC
SBS Chr12 14056436 C-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 14429620 14429622 2
Deletion Chr5 15424171 15424173 2 OsKitaake05g118300
Deletion Chr1 19212375 19212377 2
Deletion Chr5 19745288 19745609 321 OsKitaake05g156600
Deletion Chr11 28600759 28600763 4
Deletion Chr4 29464237 29464242 5
Deletion Chr1 32139574 32139576 2 OsKitaake01g324300

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20224938 20224941 2
Insertion Chr4 26151787 26151790 2
Insertion Chr8 28254007 28254010 2
Insertion Chr9 2762337 2762339 1
Insertion Chr12 4333451 4333453 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 11541332 11631107
Inversion Chr3 18437337 18671068 OsKitaake03g223900
Inversion Chr4 20330470 20595019
Inversion Chr4 20330471 20595023

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11603473 Chr2 33561667
Translocation Chr6 11632768 Chr2 33562452
Translocation Chr10 13260877 Chr4 9669275
Translocation Chr2 18385533 Chr1 21573757
Translocation Chr2 18386199 Chr1 21573771
Translocation Chr11 18398963 Chr2 18941284
Translocation Chr11 18399049 Chr2 18942445

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40876252	A-G	Hetero	INTERGENIC
SBS	Chr1	41298686	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	2483546	A-C	Hetero	INTERGENIC
SBS	Chr2	18945067	T-A	Hetero	INTERGENIC
SBS	Chr2	29984679	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g304300
SBS	Chr2	31226392	A-C	Hetero	UTR_3_PRIME
SBS	Chr3	18434133	C-A	Homo	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	32949447	G-A	Hetero	INTERGENIC
SBS	Chr6	19688157	C-A	Hetero	INTERGENIC
SBS	Chr6	23894494	T-A	Hetero	UTR_5_PRIME
SBS	Chr7	25283070	G-A	Homo	INTRON
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	12812839	T-A	Hetero	INTERGENIC
SBS	Chr8	16099746	C-A	Hetero	INTERGENIC
SBS	Chr9	13788364	A-G	Homo	INTRON
SBS	Chr10	899812	C-T	Hetero	INTERGENIC
SBS	Chr10	20080323	C-A	Hetero	INTERGENIC
SBS	Chr11	6990912	T-G	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Hetero	INTERGENIC
SBS	Chr11	28582840	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g234000
SBS	Chr12	3880569	G-A	Homo	INTERGENIC
SBS	Chr12	13521629	G-A	Hetero	INTERGENIC
SBS	Chr12	14056436	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	14429620	14429622	2
Deletion	Chr5	15424171	15424173	2	OsKitaake05g118300
Deletion	Chr1	19212375	19212377	2
Deletion	Chr5	19745288	19745609	321	OsKitaake05g156600
Deletion	Chr11	28600759	28600763	4
Deletion	Chr4	29464237	29464242	5
Deletion	Chr1	32139574	32139576	2	OsKitaake01g324300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11541332	11631107
Inversion	Chr3	18437337	18671068	OsKitaake03g223900
Inversion	Chr4	20330470	20595019
Inversion	Chr4	20330471	20595023

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes