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Mutant Information

Mutant Name	FN3502-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3502-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9811316 T-A Hetero UTR_5_PRIME
SBS Chr1 25393084 C-T Homo INTERGENIC
SBS Chr1 32648120 C-T Hetero INTERGENIC
SBS Chr1 43081848 A-T Hetero INTERGENIC
SBS Chr3 16149037 T-A Hetero INTRON
SBS Chr3 19109643 G-C Hetero INTERGENIC
SBS Chr3 26108005 T-C Homo INTERGENIC
SBS Chr3 31379579 C-A Homo INTERGENIC
SBS Chr4 17594963 A-G Hetero INTERGENIC
SBS Chr4 18112775 C-T Hetero INTERGENIC
SBS Chr4 34628045 C-T Hetero INTERGENIC
SBS Chr4 36678497 T-C Hetero INTRON
SBS Chr5 7538865 C-G Homo INTERGENIC
SBS Chr5 18716530 C-T Hetero INTERGENIC
SBS Chr6 19618964 A-T Hetero INTERGENIC
SBS Chr7 4100718 A-T Hetero UTR_5_PRIME
SBS Chr7 12749474 G-A Hetero INTERGENIC
SBS Chr7 13201699 G-T Hetero INTERGENIC
SBS Chr7 16916497 C-G Hetero INTERGENIC
SBS Chr8 13576246 A-G Hetero INTERGENIC
SBS Chr8 13576251 A-T Hetero INTERGENIC
SBS Chr8 13711901 A-T Hetero INTERGENIC
SBS Chr8 13711902 A-T Hetero INTERGENIC
SBS Chr8 19587970 C-T Hetero INTERGENIC
SBS Chr9 1214016 C-T Hetero UTR_5_PRIME
SBS Chr10 12520756 G-A Homo INTERGENIC
SBS Chr10 14950083 C-T Homo INTERGENIC
SBS Chr10 15636976 C-A Hetero INTERGENIC
SBS Chr10 15645320 T-A Hetero INTERGENIC
SBS Chr10 16381142 T-C Hetero INTERGENIC
SBS Chr11 8117189 G-A Homo INTERGENIC
SBS Chr11 20588868 G-A Hetero INTERGENIC
SBS Chr12 101197 T-A Hetero INTERGENIC
SBS Chr12 16218320 C-T Homo INTERGENIC
SBS Chr12 25705467 A-T Hetero UTR_3_PRIME

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2031975 2031977 2
Deletion Chr5 4968012 4968039 27
Deletion Chr9 6690908 6690936 28
Deletion Chr2 11793147 11793160 13
Deletion Chr1 13108219 13108222 3
Deletion Chr12 17392180 17392182 2
Deletion Chr1 40236002 40236009 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33669529 33669532 2
Insertion Chr12 9076387 9076390 2
Insertion Chr12 11618700 11618703 2
Insertion Chr5 30209797 30209800 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 22636911 23044647 2
Inversion Chr10 22636916 23044645 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8661846 Chr1 17287590

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9811316	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	25393084	C-T	Homo	INTERGENIC
SBS	Chr1	32648120	C-T	Hetero	INTERGENIC
SBS	Chr1	43081848	A-T	Hetero	INTERGENIC
SBS	Chr3	16149037	T-A	Hetero	INTRON
SBS	Chr3	19109643	G-C	Hetero	INTERGENIC
SBS	Chr3	26108005	T-C	Homo	INTERGENIC
SBS	Chr3	31379579	C-A	Homo	INTERGENIC
SBS	Chr4	17594963	A-G	Hetero	INTERGENIC
SBS	Chr4	18112775	C-T	Hetero	INTERGENIC
SBS	Chr4	34628045	C-T	Hetero	INTERGENIC
SBS	Chr4	36678497	T-C	Hetero	INTRON
SBS	Chr5	7538865	C-G	Homo	INTERGENIC
SBS	Chr5	18716530	C-T	Hetero	INTERGENIC
SBS	Chr6	19618964	A-T	Hetero	INTERGENIC
SBS	Chr7	4100718	A-T	Hetero	UTR_5_PRIME
SBS	Chr7	12749474	G-A	Hetero	INTERGENIC
SBS	Chr7	13201699	G-T	Hetero	INTERGENIC
SBS	Chr7	16916497	C-G	Hetero	INTERGENIC
SBS	Chr8	13576246	A-G	Hetero	INTERGENIC
SBS	Chr8	13576251	A-T	Hetero	INTERGENIC
SBS	Chr8	13711901	A-T	Hetero	INTERGENIC
SBS	Chr8	13711902	A-T	Hetero	INTERGENIC
SBS	Chr8	19587970	C-T	Hetero	INTERGENIC
SBS	Chr9	1214016	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	12520756	G-A	Homo	INTERGENIC
SBS	Chr10	14950083	C-T	Homo	INTERGENIC
SBS	Chr10	15636976	C-A	Hetero	INTERGENIC
SBS	Chr10	15645320	T-A	Hetero	INTERGENIC
SBS	Chr10	16381142	T-C	Hetero	INTERGENIC
SBS	Chr11	8117189	G-A	Homo	INTERGENIC
SBS	Chr11	20588868	G-A	Hetero	INTERGENIC
SBS	Chr12	101197	T-A	Hetero	INTERGENIC
SBS	Chr12	16218320	C-T	Homo	INTERGENIC
SBS	Chr12	25705467	A-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2031975	2031977	2
Deletion	Chr5	4968012	4968039	27
Deletion	Chr9	6690908	6690936	28
Deletion	Chr2	11793147	11793160	13
Deletion	Chr1	13108219	13108222	3
Deletion	Chr12	17392180	17392182	2
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	22636911	23044647	2
Inversion	Chr10	22636916	23044645	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes