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Mutant Information

Mutant Name	FN3503-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3503-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5556772 C-T Hetero INTERGENIC
SBS Chr2 14741905 C-A Homo INTERGENIC
SBS Chr2 19031516 C-T Hetero UTR_3_PRIME
SBS Chr2 21084838 G-A Hetero INTRON
SBS Chr2 24863908 A-G Hetero INTERGENIC
SBS Chr2 31540449 T-C Hetero INTERGENIC
SBS Chr3 8099996 T-A Hetero INTERGENIC
SBS Chr3 10749876 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g147900
SBS Chr4 6469134 C-T Homo INTERGENIC
SBS Chr4 9761232 G-T Hetero INTERGENIC
SBS Chr4 14764183 G-A Hetero INTERGENIC
SBS Chr4 16738671 C-T Hetero INTRON
SBS Chr5 11461969 G-T Hetero INTERGENIC
SBS Chr6 11510619 G-A Hetero INTERGENIC
SBS Chr7 1368930 C-T Hetero INTERGENIC
SBS Chr7 1643314 C-T Hetero UTR_5_PRIME
SBS Chr7 18901023 T-C Homo INTERGENIC
SBS Chr7 24348910 C-T Homo INTERGENIC
SBS Chr7 29459952 A-G Homo INTRON
SBS Chr8 5978100 A-G Homo INTERGENIC
SBS Chr8 28301932 G-T Homo INTERGENIC
SBS Chr9 20393658 G-A Hetero INTERGENIC
SBS Chr9 20962366 T-A Hetero INTERGENIC
SBS Chr9 21995460 T-C Hetero INTERGENIC
SBS Chr9 22020509 A-G Hetero UTR_3_PRIME
SBS Chr11 2187198 C-T Homo UTR_3_PRIME
SBS Chr11 14994038 G-A Hetero INTERGENIC
SBS Chr11 20097587 A-G Hetero INTRON
SBS Chr11 26099721 C-G Hetero UTR_3_PRIME
SBS Chr12 3356395 C-T Hetero INTERGENIC
SBS Chr12 6155683 A-T Hetero INTERGENIC
SBS Chr12 19284165 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2433001 2450000 16999 2
Deletion Chr1 5977001 6189000 211999 24
Deletion Chr5 30227817 30228169 352
Deletion Chr1 39166001 39300000 133999 22
Deletion Chr1 39313001 39362000 48999 13

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 29195544 29195547 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 21352607 21598932 OsKitaake10g168400
Inversion Chr10 21352628 21610425 OsKitaake10g168400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 396597 Chr8 14052449 OsKitaake09g002900
Translocation Chr9 397541 Chr8 14052447 OsKitaake09g003000
Translocation Chr11 7395366 Chr10 21602346 OsKitaake10g172600
Translocation Chr11 7395373 Chr10 21598938
Translocation Chr11 18113440 Chr9 502308

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5556772	C-T	Hetero	INTERGENIC
SBS	Chr2	14741905	C-A	Homo	INTERGENIC
SBS	Chr2	19031516	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	21084838	G-A	Hetero	INTRON
SBS	Chr2	24863908	A-G	Hetero	INTERGENIC
SBS	Chr2	31540449	T-C	Hetero	INTERGENIC
SBS	Chr3	8099996	T-A	Hetero	INTERGENIC
SBS	Chr3	10749876	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g147900
SBS	Chr4	6469134	C-T	Homo	INTERGENIC
SBS	Chr4	9761232	G-T	Hetero	INTERGENIC
SBS	Chr4	14764183	G-A	Hetero	INTERGENIC
SBS	Chr4	16738671	C-T	Hetero	INTRON
SBS	Chr5	11461969	G-T	Hetero	INTERGENIC
SBS	Chr6	11510619	G-A	Hetero	INTERGENIC
SBS	Chr7	1368930	C-T	Hetero	INTERGENIC
SBS	Chr7	1643314	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	18901023	T-C	Homo	INTERGENIC
SBS	Chr7	24348910	C-T	Homo	INTERGENIC
SBS	Chr7	29459952	A-G	Homo	INTRON
SBS	Chr8	5978100	A-G	Homo	INTERGENIC
SBS	Chr8	28301932	G-T	Homo	INTERGENIC
SBS	Chr9	20393658	G-A	Hetero	INTERGENIC
SBS	Chr9	20962366	T-A	Hetero	INTERGENIC
SBS	Chr9	21995460	T-C	Hetero	INTERGENIC
SBS	Chr9	22020509	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	2187198	C-T	Homo	UTR_3_PRIME
SBS	Chr11	14994038	G-A	Hetero	INTERGENIC
SBS	Chr11	20097587	A-G	Hetero	INTRON
SBS	Chr11	26099721	C-G	Hetero	UTR_3_PRIME
SBS	Chr12	3356395	C-T	Hetero	INTERGENIC
SBS	Chr12	6155683	A-T	Hetero	INTERGENIC
SBS	Chr12	19284165	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2433001	2450000	16999	2
Deletion	Chr1	5977001	6189000	211999	24
Deletion	Chr5	30227817	30228169	352
Deletion	Chr1	39166001	39300000	133999	22
Deletion	Chr1	39313001	39362000	48999	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	21352607	21598932	OsKitaake10g168400
Inversion	Chr10	21352628	21610425	OsKitaake10g168400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes