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| Mutant Information |
|---|
| Mutant Name | FN3504-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3504-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17303721 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21216537 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23131008 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 2237251 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g033600 |
| SBS | Chr2 | 8336508 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21307459 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25112084 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30624669 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 2384383 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3372797 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g047700 |
| SBS | Chr3 | 10379498 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10494584 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13530005 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13608479 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 22319616 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g242600 |
| SBS | Chr4 | 2793572 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2840794 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9163192 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4937812 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24068881 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 131159 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5525104 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 8300499 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10445930 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10445931 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 272876 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 6623376 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 19965363 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 25850331 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 8794503 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 21133810 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15586908 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1992641 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 4588915 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21067080 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21779264 | T-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 7045417 | 7045425 | 8 | |
| Deletion | Chr10 | 11295241 | 11295247 | 6 | |
| Deletion | Chr1 | 15006284 | 15006289 | 5 | |
| Deletion | Chr7 | 22879115 | 22879116 | 1 | |
| Deletion | Chr6 | 23617648 | 23617655 | 7 | OsKitaake06g208100 |
| Deletion | Chr6 | 23717567 | 23717570 | 3 | |
| Deletion | Chr5 | 29117015 | 29117024 | 9 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 19492174 | 19492179 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 4503605 | 4611448 | |
| Inversion | Chr12 | 4504488 | 4611475 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 2479884 | Chr4 | 7250648 | OsKitaake07g033300 |
| Translocation | Chr7 | 2479888 | Chr4 | 7248046 | OsKitaake07g033300 |
| Translocation | Chr7 | 6773692 | Chr1 | 28959385 | |
| Translocation | Chr7 | 6774222 | Chr1 | 28959394 |