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Mutant Information

Mutant Name	FN3505-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3505-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8370263	G-T	Hetero	INTRON
SBS	Chr2	16229292	G-A	Homo	INTRON
SBS	Chr2	17215709	A-T	Homo	INTERGENIC
SBS	Chr2	21983826	T-G	Homo	INTRON
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr3	3392946	G-A	Hetero	INTERGENIC
SBS	Chr3	3436210	T-C	Hetero	INTERGENIC
SBS	Chr3	3545847	T-C	Hetero	INTERGENIC
SBS	Chr3	14994225	C-T	Homo	INTERGENIC
SBS	Chr3	23514148	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr3	35678697	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	29054286	C-T	Hetero	INTERGENIC
SBS	Chr4	29444487	C-T	Hetero	INTERGENIC
SBS	Chr5	3543372	A-T	Hetero	INTERGENIC
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	15299757	C-T	Hetero	INTERGENIC
SBS	Chr6	2205369	T-A	Hetero	UTR_5_PRIME
SBS	Chr6	17264169	T-A	Hetero	INTERGENIC
SBS	Chr6	25478165	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g226100
SBS	Chr7	2250899	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g031400
SBS	Chr7	3305773	T-C	Homo	INTERGENIC
SBS	Chr7	4038286	G-A	Homo	INTERGENIC
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	14714373	G-A	Homo	INTERGENIC
SBS	Chr7	28247215	C-T	Homo	INTRON
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	26031173	G-A	Homo	INTERGENIC
SBS	Chr9	5346925	C-A	Hetero	INTERGENIC
SBS	Chr9	13148704	C-T	Hetero	INTERGENIC
SBS	Chr10	8545577	G-C	Hetero	INTERGENIC
SBS	Chr10	12451422	T-A	Hetero	INTERGENIC
SBS	Chr10	13146124	C-T	Hetero	INTERGENIC
SBS	Chr11	20686642	C-A	Hetero	INTERGENIC
SBS	Chr12	2150426	C-T	Hetero	INTERGENIC
SBS	Chr12	2150427	C-T	Hetero	INTERGENIC
SBS	Chr12	13736308	T-G	Homo	INTERGENIC
SBS	Chr12	17820381	T-C	Homo	INTERGENIC
SBS	Chr12	19936116	C-T	Homo	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2245674	2245676	2
Deletion	Chr12	4205762	4205766	4
Deletion	Chr1	6632189	6632190	1	OsKitaake01g083600
Deletion	Chr7	9073747	9073756	9
Deletion	Chr10	10242544	10242547	3
Deletion	Chr3	17803102	17803104	2
Deletion	Chr8	22079471	22079479	8
Deletion	Chr4	22544001	22739000	194999	23
Deletion	Chr8	24114918	24114919	1
Deletion	Chr2	24279485	24279486	1	OsKitaake02g240600

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr5	16168465	16168468	2
Insertion	Chr4	9890301	9890364	62
Insertion	Chr8	1227183	1227186	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	347070	1178241	OsKitaake07g016200
Inversion	Chr6	27328001	28049082	OsKitaake06g246100
Inversion	Chr6	27328002	28049078	OsKitaake06g246100