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Mutant Information

Mutant Name	FN3506-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3506-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9889312 C-A Hetero INTERGENIC
SBS Chr1 13081959 C-A Hetero INTRON
SBS Chr1 25085446 T-C Hetero INTERGENIC
SBS Chr2 12257142 T-C Homo INTERGENIC
SBS Chr2 12937409 T-C Homo INTERGENIC
SBS Chr2 22895379 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 28782991 T-C Hetero INTERGENIC
SBS Chr3 5217052 C-A Homo INTERGENIC
SBS Chr3 9366272 G-C Homo INTERGENIC
SBS Chr3 15787740 C-T Hetero INTERGENIC
SBS Chr3 16014896 A-G Homo INTERGENIC
SBS Chr3 17580946 C-G Homo INTERGENIC
SBS Chr3 20924576 G-A Homo INTERGENIC
SBS Chr3 25897779 C-T Homo INTRON
SBS Chr3 34648752 C-T Homo INTERGENIC
SBS Chr4 16191592 G-A Homo INTERGENIC
SBS Chr4 22728602 A-G Homo INTERGENIC
SBS Chr4 32482755 T-C Hetero INTERGENIC
SBS Chr4 36099383 C-T Hetero INTERGENIC
SBS Chr5 112647 C-T Hetero INTERGENIC
SBS Chr5 10341068 A-G Hetero INTERGENIC
SBS Chr5 20856381 C-T Hetero INTERGENIC
SBS Chr5 21252776 C-T Hetero INTRON
SBS Chr5 23886311 C-T Hetero INTERGENIC
SBS Chr5 27646515 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g252500
SBS Chr5 29025218 G-A Homo INTERGENIC
SBS Chr6 5368607 T-A Homo INTRON
SBS Chr6 6916096 G-A Hetero INTERGENIC
SBS Chr6 12092512 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g130600
SBS Chr6 17300962 G-A Hetero INTERGENIC
SBS Chr7 14548375 C-T Hetero INTERGENIC
SBS Chr7 19657733 G-A Hetero INTERGENIC
SBS Chr7 22990293 T-A Hetero INTERGENIC
SBS Chr8 9213921 C-G Hetero INTERGENIC
SBS Chr8 9941453 C-T Hetero INTERGENIC
SBS Chr8 14278236 C-T Hetero INTERGENIC
SBS Chr9 12149601 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g078700
SBS Chr9 15168234 G-A Hetero INTERGENIC
SBS Chr10 6572812 G-A Homo INTERGENIC
SBS Chr10 6591809 T-C Homo INTERGENIC
SBS Chr11 8067305 C-A Homo INTERGENIC
SBS Chr11 13005627 C-T Hetero INTERGENIC
SBS Chr11 14565995 C-T Hetero INTERGENIC
SBS Chr11 14908493 C-T Hetero INTERGENIC
SBS Chr11 17450132 C-A Hetero INTERGENIC
SBS Chr11 18327646 T-A Hetero INTERGENIC
SBS Chr11 19545662 C-T Hetero INTERGENIC
SBS Chr11 23663144 C-A Hetero INTERGENIC
SBS Chr12 6100127 T-C Hetero INTERGENIC
SBS Chr12 11827347 A-T Homo INTERGENIC
SBS Chr12 12576486 C-A Homo SYNONYMOUS_CODING

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4410623 4410624 1
Deletion Chr10 7459805 7459809 4
Deletion Chr2 11423359 11423363 4
Deletion Chr12 12610001 12638000 27999 2
Deletion Chr9 14097567 14097569 2
Deletion Chr1 15920414 15920415 1
Deletion Chr7 25107093 25107100 7
Deletion Chr4 28102802 28102803 1
Deletion Chr1 38637089 38637094 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13543372 13543375 2
Insertion Chr12 22392434 22392437 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 12948726 13126187
Inversion Chr11 12948758 13126203

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 10305302 Chr3 22595439
Translocation Chr8 10305481 Chr3 22595463
Translocation Chr9 11813815 Chr1 27789383 OsKitaake01g269600
Translocation Chr9 11813836 Chr1 27789652 OsKitaake01g269600
Translocation Chr10 15216078 Chr4 13017163
Translocation Chr10 15216084 Chr4 13009536

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9889312	C-A	Hetero	INTERGENIC
SBS	Chr1	13081959	C-A	Hetero	INTRON
SBS	Chr1	25085446	T-C	Hetero	INTERGENIC
SBS	Chr2	12257142	T-C	Homo	INTERGENIC
SBS	Chr2	12937409	T-C	Homo	INTERGENIC
SBS	Chr2	22895379	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	28782991	T-C	Hetero	INTERGENIC
SBS	Chr3	5217052	C-A	Homo	INTERGENIC
SBS	Chr3	9366272	G-C	Homo	INTERGENIC
SBS	Chr3	15787740	C-T	Hetero	INTERGENIC
SBS	Chr3	16014896	A-G	Homo	INTERGENIC
SBS	Chr3	17580946	C-G	Homo	INTERGENIC
SBS	Chr3	20924576	G-A	Homo	INTERGENIC
SBS	Chr3	25897779	C-T	Homo	INTRON
SBS	Chr3	34648752	C-T	Homo	INTERGENIC
SBS	Chr4	16191592	G-A	Homo	INTERGENIC
SBS	Chr4	22728602	A-G	Homo	INTERGENIC
SBS	Chr4	32482755	T-C	Hetero	INTERGENIC
SBS	Chr4	36099383	C-T	Hetero	INTERGENIC
SBS	Chr5	112647	C-T	Hetero	INTERGENIC
SBS	Chr5	10341068	A-G	Hetero	INTERGENIC
SBS	Chr5	20856381	C-T	Hetero	INTERGENIC
SBS	Chr5	21252776	C-T	Hetero	INTRON
SBS	Chr5	23886311	C-T	Hetero	INTERGENIC
SBS	Chr5	27646515	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g252500
SBS	Chr5	29025218	G-A	Homo	INTERGENIC
SBS	Chr6	5368607	T-A	Homo	INTRON
SBS	Chr6	6916096	G-A	Hetero	INTERGENIC
SBS	Chr6	12092512	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g130600
SBS	Chr6	17300962	G-A	Hetero	INTERGENIC
SBS	Chr7	14548375	C-T	Hetero	INTERGENIC
SBS	Chr7	19657733	G-A	Hetero	INTERGENIC
SBS	Chr7	22990293	T-A	Hetero	INTERGENIC
SBS	Chr8	9213921	C-G	Hetero	INTERGENIC
SBS	Chr8	9941453	C-T	Hetero	INTERGENIC
SBS	Chr8	14278236	C-T	Hetero	INTERGENIC
SBS	Chr9	12149601	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g078700
SBS	Chr9	15168234	G-A	Hetero	INTERGENIC
SBS	Chr10	6572812	G-A	Homo	INTERGENIC
SBS	Chr10	6591809	T-C	Homo	INTERGENIC
SBS	Chr11	8067305	C-A	Homo	INTERGENIC
SBS	Chr11	13005627	C-T	Hetero	INTERGENIC
SBS	Chr11	14565995	C-T	Hetero	INTERGENIC
SBS	Chr11	14908493	C-T	Hetero	INTERGENIC
SBS	Chr11	17450132	C-A	Hetero	INTERGENIC
SBS	Chr11	18327646	T-A	Hetero	INTERGENIC
SBS	Chr11	19545662	C-T	Hetero	INTERGENIC
SBS	Chr11	23663144	C-A	Hetero	INTERGENIC
SBS	Chr12	6100127	T-C	Hetero	INTERGENIC
SBS	Chr12	11827347	A-T	Homo	INTERGENIC
SBS	Chr12	12576486	C-A	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4410623	4410624	1
Deletion	Chr10	7459805	7459809	4
Deletion	Chr2	11423359	11423363	4
Deletion	Chr12	12610001	12638000	27999	2
Deletion	Chr9	14097567	14097569	2
Deletion	Chr1	15920414	15920415	1
Deletion	Chr7	25107093	25107100	7
Deletion	Chr4	28102802	28102803	1
Deletion	Chr1	38637089	38637094	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12948726	13126187
Inversion	Chr11	12948758	13126203

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes