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| Mutant Information |
|---|
| Mutant Name | FN3507-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3507-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20493269 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g200300 |
| SBS | Chr1 | 29119975 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 23172841 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30563022 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 694606 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 5824280 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 21231000 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26610646 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35455387 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2257725 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7946848 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10493486 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11549484 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 14009080 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14009083 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 25793 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16549303 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18585830 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 20805183 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g171300 |
| SBS | Chr7 | 25618012 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13483295 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21505933 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 826473 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5296563 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2707426 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 11091661 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21640373 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 458578 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 7527911 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9209050 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26852522 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1651975 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 6035407 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16370049 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1361243 | 1361244 | 1 | OsKitaake02g020900 |
| Deletion | Chr4 | 1886185 | 1886187 | 2 | |
| Deletion | Chr1 | 9454707 | 9454710 | 3 | OsKitaake01g121200 |
| Deletion | Chr9 | 13202444 | 13202446 | 2 | |
| Deletion | Chr12 | 13337644 | 13337654 | 10 | |
| Deletion | Chr3 | 16102703 | 16102704 | 1 | |
| Deletion | Chr5 | 18304308 | 18304309 | 1 | |
| Deletion | Chr12 | 19273430 | 19273431 | 1 | OsKitaake12g144200 |
| Deletion | Chr11 | 22138475 | 22138477 | 2 | |
| Deletion | Chr5 | 23248369 | 23248370 | 1 | |
| Deletion | Chr12 | 23644393 | 23644397 | 4 | |
| Deletion | Chr3 | 26547272 | 26547274 | 2 | |
| Deletion | Chr3 | 35028911 | 35028918 | 7 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 12576167 | 12894610 | |
| Inversion | Chr8 | 12576171 | 12894620 | |
| Inversion | Chr8 | 23874419 | 23877513 | OsKitaake08g184000 |
| Inversion | Chr8 | 23874431 | 23877518 | OsKitaake08g184000 |