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Mutant Information

Mutant Name	FN3508-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3508-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15479710 C-G Homo SYNONYMOUS_CODING
SBS Chr1 31655560 T-C Hetero INTERGENIC
SBS Chr1 38959557 C-T Hetero INTERGENIC
SBS Chr1 40756812 G-A Hetero INTERGENIC
SBS Chr1 42672746 A-C Hetero INTERGENIC
SBS Chr2 9281631 G-A Hetero INTERGENIC
SBS Chr2 11887866 G-A Hetero INTERGENIC
SBS Chr2 20680293 G-A Hetero INTERGENIC
SBS Chr2 35781322 G-A Homo UTR_5_PRIME
SBS Chr3 1662203 C-T Hetero INTRON
SBS Chr3 1903150 A-G Hetero UTR_3_PRIME
SBS Chr3 8940136 G-A Hetero INTRON
SBS Chr3 17710409 G-C Homo INTERGENIC
SBS Chr4 2423312 A-C Hetero INTERGENIC
SBS Chr4 11560772 G-T Hetero INTERGENIC
SBS Chr4 14450245 G-C Hetero INTERGENIC
SBS Chr4 27692484 T-G Hetero INTERGENIC
SBS Chr4 33340867 A-T Hetero INTRON
SBS Chr5 16852651 G-A Hetero INTERGENIC
SBS Chr5 18694485 C-G Hetero INTERGENIC
SBS Chr6 6879183 G-A Hetero INTERGENIC
SBS Chr6 8079777 C-T Hetero INTERGENIC
SBS Chr6 9741055 T-C Hetero INTERGENIC
SBS Chr6 28028505 C-A Homo INTERGENIC
SBS Chr8 12813596 G-T Hetero INTERGENIC
SBS Chr8 17413172 G-A Hetero INTERGENIC
SBS Chr10 1144543 G-T Homo INTERGENIC
SBS Chr10 9200855 A-G Hetero INTERGENIC
SBS Chr10 18313107 C-T Homo INTRON
SBS Chr11 6637396 G-A Homo SYNONYMOUS_CODING
SBS Chr11 10828199 A-G Homo INTERGENIC
SBS Chr11 11681723 G-C Homo INTERGENIC
SBS Chr12 10851511 A-G Hetero UTR_5_PRIME
SBS Chr12 24089197 C-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3977504 3977511 7
Deletion Chr10 4551567 4551579 12
Deletion Chr5 6125007 6125008 1
Deletion Chr11 10671005 10671007 2
Deletion Chr4 15394001 15438000 43999 6
Deletion Chr10 17447309 17447325 16
Deletion Chr10 18987227 18987228 1
Deletion Chr1 21765199 21765201 2
Deletion Chr8 24918479 24918480 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 17903266 17903269 2
Insertion Chr12 12107117 12107120 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2342382 2375245 OsKitaake09g012200
Inversion Chr9 2342383 2375241 OsKitaake09g012200
Inversion Chr9 8569464 8983010 OsKitaake09g052400
Inversion Chr9 8569470 8983036 OsKitaake09g052400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 13163516 Chr1 41057356 OsKitaake01g448050
Translocation Chr9 13163893 Chr1 41057356 OsKitaake01g448050

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15479710	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	31655560	T-C	Hetero	INTERGENIC
SBS	Chr1	38959557	C-T	Hetero	INTERGENIC
SBS	Chr1	40756812	G-A	Hetero	INTERGENIC
SBS	Chr1	42672746	A-C	Hetero	INTERGENIC
SBS	Chr2	9281631	G-A	Hetero	INTERGENIC
SBS	Chr2	11887866	G-A	Hetero	INTERGENIC
SBS	Chr2	20680293	G-A	Hetero	INTERGENIC
SBS	Chr2	35781322	G-A	Homo	UTR_5_PRIME
SBS	Chr3	1662203	C-T	Hetero	INTRON
SBS	Chr3	1903150	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	8940136	G-A	Hetero	INTRON
SBS	Chr3	17710409	G-C	Homo	INTERGENIC
SBS	Chr4	2423312	A-C	Hetero	INTERGENIC
SBS	Chr4	11560772	G-T	Hetero	INTERGENIC
SBS	Chr4	14450245	G-C	Hetero	INTERGENIC
SBS	Chr4	27692484	T-G	Hetero	INTERGENIC
SBS	Chr4	33340867	A-T	Hetero	INTRON
SBS	Chr5	16852651	G-A	Hetero	INTERGENIC
SBS	Chr5	18694485	C-G	Hetero	INTERGENIC
SBS	Chr6	6879183	G-A	Hetero	INTERGENIC
SBS	Chr6	8079777	C-T	Hetero	INTERGENIC
SBS	Chr6	9741055	T-C	Hetero	INTERGENIC
SBS	Chr6	28028505	C-A	Homo	INTERGENIC
SBS	Chr8	12813596	G-T	Hetero	INTERGENIC
SBS	Chr8	17413172	G-A	Hetero	INTERGENIC
SBS	Chr10	1144543	G-T	Homo	INTERGENIC
SBS	Chr10	9200855	A-G	Hetero	INTERGENIC
SBS	Chr10	18313107	C-T	Homo	INTRON
SBS	Chr11	6637396	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	10828199	A-G	Homo	INTERGENIC
SBS	Chr11	11681723	G-C	Homo	INTERGENIC
SBS	Chr12	10851511	A-G	Hetero	UTR_5_PRIME
SBS	Chr12	24089197	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3977504	3977511	7
Deletion	Chr10	4551567	4551579	12
Deletion	Chr5	6125007	6125008	1
Deletion	Chr11	10671005	10671007	2
Deletion	Chr4	15394001	15438000	43999	6
Deletion	Chr10	17447309	17447325	16
Deletion	Chr10	18987227	18987228	1
Deletion	Chr1	21765199	21765201	2
Deletion	Chr8	24918479	24918480	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2342382	2375245	OsKitaake09g012200
Inversion	Chr9	2342383	2375241	OsKitaake09g012200
Inversion	Chr9	8569464	8983010	OsKitaake09g052400
Inversion	Chr9	8569470	8983036	OsKitaake09g052400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes