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Mutant Information

Mutant Name	FN3509-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3509-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1166777	C-T	Homo	INTERGENIC
SBS	Chr1	3220454	G-T	Hetero	INTERGENIC
SBS	Chr1	12439230	G-A	Homo	INTERGENIC
SBS	Chr1	27235070	T-C	Hetero	INTERGENIC
SBS	Chr1	30792878	C-T	Hetero	INTRON
SBS	Chr1	34577874	T-A	Hetero	INTERGENIC
SBS	Chr2	9464592	A-G	Hetero	INTERGENIC
SBS	Chr2	11951208	G-A	Hetero	INTERGENIC
SBS	Chr3	14255903	C-T	Hetero	INTERGENIC
SBS	Chr3	16620500	G-A	Hetero	INTERGENIC
SBS	Chr3	21665752	C-T	Hetero	INTERGENIC
SBS	Chr3	24457458	G-A	Hetero	INTERGENIC
SBS	Chr3	30413311	T-C	Hetero	INTRON
SBS	Chr3	30522493	T-G	Hetero	INTERGENIC
SBS	Chr4	19761994	G-T	Hetero	INTERGENIC
SBS	Chr4	20585371	G-T	Hetero	INTRON
SBS	Chr4	23572017	G-T	Hetero	INTRON
SBS	Chr4	24684272	C-A	Hetero	INTERGENIC
SBS	Chr4	34293104	A-G	Hetero	INTERGENIC
SBS	Chr5	2299269	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	8643447	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g082400
SBS	Chr5	9603021	G-T	Hetero	INTRON
SBS	Chr5	28151345	G-T	Hetero	INTRON
SBS	Chr6	12784484	T-A	Hetero	INTRON
SBS	Chr6	28868387	T-A	Hetero	INTERGENIC
SBS	Chr7	12894712	C-T	Homo	INTERGENIC
SBS	Chr7	25236489	C-A	Hetero	INTERGENIC
SBS	Chr8	6660982	C-T	Hetero	INTERGENIC
SBS	Chr8	17086853	G-A	Hetero	INTERGENIC
SBS	Chr8	17122721	A-G	Hetero	INTERGENIC
SBS	Chr8	25792812	G-A	Hetero	INTERGENIC
SBS	Chr8	28876736	T-C	Hetero	INTRON
SBS	Chr9	20590908	A-T	Hetero	INTERGENIC
SBS	Chr9	22452965	C-T	Hetero	START_GAINED
SBS	Chr10	1504716	A-G	Hetero	INTERGENIC
SBS	Chr10	1626432	T-G	Hetero	INTRON
SBS	Chr10	2955434	T-C	Hetero	INTERGENIC
SBS	Chr10	4321759	C-T	Hetero	INTERGENIC
SBS	Chr10	4694294	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g034400
SBS	Chr10	5265942	G-A	Hetero	INTERGENIC
SBS	Chr10	5403449	G-A	Hetero	INTERGENIC
SBS	Chr10	6488341	C-T	Hetero	INTRON
SBS	Chr10	12310350	G-A	Hetero	INTERGENIC
SBS	Chr10	16871275	C-T	Hetero	INTERGENIC
SBS	Chr10	19793716	T-G	Hetero	INTRON
SBS	Chr11	9470055	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	13370585	T-G	Homo	INTERGENIC
SBS	Chr11	23436152	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g186700
SBS	Chr12	3698149	C-T	Homo	INTERGENIC
SBS	Chr12	12045425	C-T	Hetero	INTERGENIC
SBS	Chr12	13772706	A-T	Hetero	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1961777	1961778	1
Deletion	Chr8	2955001	2986000	30999	6
Deletion	Chr12	3376003	3376018	15
Deletion	Chr8	4147517	4147518	1
Deletion	Chr11	7915732	7915734	2
Deletion	Chr5	8608577	8608600	23
Deletion	Chr5	11489201	11489205	4
Deletion	Chr11	16314373	16314378	5
Deletion	Chr3	17149870	17149872	2
Deletion	Chr6	24818748	24818760	12
Deletion	Chr7	26528484	26528493	9
Deletion	Chr6	29680001	29713000	32999	5
Deletion	Chr5	29801047	29801051	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	7593719	7593722	2
Insertion	Chr5	14329035	14329039	3
Insertion	Chr6	2163324	2163327	2
Insertion	Chr9	13497460	13497530	69

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2931991	2952432
Inversion	Chr8	2931998	2985088	OsKitaake08g033000
Inversion	Chr8	3277363	3537105
Inversion	Chr8	3277919	3537111
Inversion	Chr6	4377225	4495795	OsKitaake06g060200
Inversion	Chr6	4377228	4495794	OsKitaake06g060200
Inversion	Chr1	24645073	25225560	OsKitaake01g244200
Inversion	Chr1	24645076	25225560	OsKitaake01g244200
Inversion	Chr6	27885454	28742767
Inversion	Chr6	27885458	28742767

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3277582	Chr7	7443839
Translocation	Chr8	3277905	Chr7	7443819
Translocation	Chr4	35259281	Chr1	40684308	2
Translocation	Chr4	35259282	Chr1	40684307	2

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Variant Type

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Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

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End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

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Position 2

Number of Genes

Variant Type

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Chromosome

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Number of Genes