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Mutant Information

Mutant Name	FN3510-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3510-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8805220 T-A Hetero INTRON
SBS Chr1 21936591 G-A Hetero INTERGENIC
SBS Chr1 37333069 G-A Hetero INTERGENIC
SBS Chr2 7489291 C-A Hetero INTERGENIC
SBS Chr2 17934550 A-G Hetero INTERGENIC
SBS Chr2 25596240 G-A Homo INTERGENIC
SBS Chr2 34796154 G-C Hetero INTERGENIC
SBS Chr3 13009822 G-T Hetero INTERGENIC
SBS Chr3 17543011 T-C Hetero UTR_5_PRIME
SBS Chr3 18613180 G-C Hetero INTERGENIC
SBS Chr3 23836672 G-A Hetero INTERGENIC
SBS Chr3 26150386 G-A Hetero INTERGENIC
SBS Chr4 9419559 A-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Hetero INTERGENIC
SBS Chr4 12468984 A-G Homo INTERGENIC
SBS Chr4 12825769 G-T Hetero INTERGENIC
SBS Chr4 14682924 G-C Hetero INTERGENIC
SBS Chr4 25850959 A-T Hetero INTRON
SBS Chr4 25903570 C-T Hetero INTERGENIC
SBS Chr5 8993912 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 16805331 T-A Hetero INTRON
SBS Chr5 23255983 C-T Hetero UTR_5_PRIME
SBS Chr6 12787184 A-G Hetero INTRON
SBS Chr6 18277613 G-A Hetero INTERGENIC
SBS Chr7 10560155 T-A Homo INTRON
SBS Chr7 18258823 A-G Hetero INTERGENIC
SBS Chr7 18797266 C-T Hetero INTRON
SBS Chr7 18797267 C-T Hetero INTRON
SBS Chr7 18797268 C-T Hetero INTRON
SBS Chr7 19306467 G-A Hetero INTERGENIC
SBS Chr7 25856176 C-T Hetero INTERGENIC
SBS Chr7 27743924 A-G Hetero INTERGENIC
SBS Chr8 9483392 G-C Homo INTERGENIC
SBS Chr8 18115925 C-T Hetero INTERGENIC
SBS Chr9 3075253 A-T Hetero INTERGENIC
SBS Chr9 6102234 G-A Homo INTERGENIC
SBS Chr10 17593788 C-A Hetero INTRON
SBS Chr11 8730466 G-A Hetero INTRON
SBS Chr11 20576079 A-C Hetero INTERGENIC
SBS Chr12 19051634 G-T Homo INTERGENIC
SBS Chr12 24538288 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 91310 91662 352
Deletion Chr6 2641476 2641492 16
Deletion Chr6 4022603 4022609 6
Deletion Chr7 5410243 5410250 7
Deletion Chr12 6391811 6391818 7
Deletion Chr2 8529001 8539000 9999 2
Deletion Chr3 8959274 8959280 6 OsKitaake03g122800
Deletion Chr1 9330515 9330527 12
Deletion Chr12 12697216 12697236 20
Deletion Chr8 15805617 15805620 3
Deletion Chr10 16003078 16003086 8
Deletion Chr2 22775838 22775848 10
Deletion Chr11 23499864 23499941 77
Deletion Chr12 24047276 24047283 7
Deletion Chr4 24755105 24755106 1 OsKitaake04g163200
Deletion Chr6 25014682 25014697 15
Deletion Chr4 27509288 27509302 14
Deletion Chr7 28507989 28507994 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5475241 5475244 2
Insertion Chr7 25615449 25615454 4 OsKitaake07g233200
Insertion Chr8 25883556 25883559 2
Insertion Chr12 1511974 1511978 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13016153 13881499
Inversion Chr1 13016162 13881500
Inversion Chr5 16523737 16723047 OsKitaake05g128100
Inversion Chr5 16523740 16723052 OsKitaake05g128100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 25719480 Chr1 16407873
Translocation Chr8 25719508 Chr1 16531389

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8805220	T-A	Hetero	INTRON
SBS	Chr1	21936591	G-A	Hetero	INTERGENIC
SBS	Chr1	37333069	G-A	Hetero	INTERGENIC
SBS	Chr2	7489291	C-A	Hetero	INTERGENIC
SBS	Chr2	17934550	A-G	Hetero	INTERGENIC
SBS	Chr2	25596240	G-A	Homo	INTERGENIC
SBS	Chr2	34796154	G-C	Hetero	INTERGENIC
SBS	Chr3	13009822	G-T	Hetero	INTERGENIC
SBS	Chr3	17543011	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	18613180	G-C	Hetero	INTERGENIC
SBS	Chr3	23836672	G-A	Hetero	INTERGENIC
SBS	Chr3	26150386	G-A	Hetero	INTERGENIC
SBS	Chr4	9419559	A-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Hetero	INTERGENIC
SBS	Chr4	12468984	A-G	Homo	INTERGENIC
SBS	Chr4	12825769	G-T	Hetero	INTERGENIC
SBS	Chr4	14682924	G-C	Hetero	INTERGENIC
SBS	Chr4	25850959	A-T	Hetero	INTRON
SBS	Chr4	25903570	C-T	Hetero	INTERGENIC
SBS	Chr5	8993912	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	16805331	T-A	Hetero	INTRON
SBS	Chr5	23255983	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	12787184	A-G	Hetero	INTRON
SBS	Chr6	18277613	G-A	Hetero	INTERGENIC
SBS	Chr7	10560155	T-A	Homo	INTRON
SBS	Chr7	18258823	A-G	Hetero	INTERGENIC
SBS	Chr7	18797266	C-T	Hetero	INTRON
SBS	Chr7	18797267	C-T	Hetero	INTRON
SBS	Chr7	18797268	C-T	Hetero	INTRON
SBS	Chr7	19306467	G-A	Hetero	INTERGENIC
SBS	Chr7	25856176	C-T	Hetero	INTERGENIC
SBS	Chr7	27743924	A-G	Hetero	INTERGENIC
SBS	Chr8	9483392	G-C	Homo	INTERGENIC
SBS	Chr8	18115925	C-T	Hetero	INTERGENIC
SBS	Chr9	3075253	A-T	Hetero	INTERGENIC
SBS	Chr9	6102234	G-A	Homo	INTERGENIC
SBS	Chr10	17593788	C-A	Hetero	INTRON
SBS	Chr11	8730466	G-A	Hetero	INTRON
SBS	Chr11	20576079	A-C	Hetero	INTERGENIC
SBS	Chr12	19051634	G-T	Homo	INTERGENIC
SBS	Chr12	24538288	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	91310	91662	352
Deletion	Chr6	2641476	2641492	16
Deletion	Chr6	4022603	4022609	6
Deletion	Chr7	5410243	5410250	7
Deletion	Chr12	6391811	6391818	7
Deletion	Chr2	8529001	8539000	9999	2
Deletion	Chr3	8959274	8959280	6	OsKitaake03g122800
Deletion	Chr1	9330515	9330527	12
Deletion	Chr12	12697216	12697236	20
Deletion	Chr8	15805617	15805620	3
Deletion	Chr10	16003078	16003086	8
Deletion	Chr2	22775838	22775848	10
Deletion	Chr11	23499864	23499941	77
Deletion	Chr12	24047276	24047283	7
Deletion	Chr4	24755105	24755106	1	OsKitaake04g163200
Deletion	Chr6	25014682	25014697	15
Deletion	Chr4	27509288	27509302	14
Deletion	Chr7	28507989	28507994	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13016153	13881499
Inversion	Chr1	13016162	13881500
Inversion	Chr5	16523737	16723047	OsKitaake05g128100
Inversion	Chr5	16523740	16723052	OsKitaake05g128100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes