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Mutant Information

Mutant Name	FN3512-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3512-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17403366 G-A Homo INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 31556589 G-A Hetero INTERGENIC
SBS Chr1 34942547 G-T Hetero INTERGENIC
SBS Chr1 34942548 C-G Hetero INTERGENIC
SBS Chr2 6767753 T-C Hetero UTR_5_PRIME
SBS Chr2 12670764 A-G Hetero INTERGENIC
SBS Chr2 19079803 C-G Hetero INTERGENIC
SBS Chr3 6851612 G-A Homo INTERGENIC
SBS Chr3 12456743 C-T Hetero INTERGENIC
SBS Chr3 19817976 G-C Hetero INTERGENIC
SBS Chr3 24030772 G-A Hetero INTRON
SBS Chr3 26222416 T-A Hetero INTERGENIC
SBS Chr4 7862768 G-C Hetero INTERGENIC
SBS Chr4 10835467 G-A Homo INTERGENIC
SBS Chr4 10835468 A-C Homo INTERGENIC
SBS Chr4 16453339 C-T Hetero INTERGENIC
SBS Chr4 19785837 T-C Hetero INTERGENIC
SBS Chr6 2493349 C-T Hetero INTERGENIC
SBS Chr6 2874089 C-T Hetero INTERGENIC
SBS Chr6 8203340 C-T Homo INTERGENIC
SBS Chr6 19457593 A-T Homo INTERGENIC
SBS Chr6 28904439 C-T Homo INTERGENIC
SBS Chr7 15740008 T-C Hetero INTERGENIC
SBS Chr7 26752401 G-C Hetero SYNONYMOUS_CODING
SBS Chr8 8397868 G-A Hetero INTERGENIC
SBS Chr8 10267841 C-T Hetero INTERGENIC
SBS Chr8 22306362 C-A Hetero INTERGENIC
SBS Chr8 25274479 T-C Homo INTERGENIC
SBS Chr9 4502794 G-A Hetero INTERGENIC
SBS Chr9 5934305 G-T Hetero INTERGENIC
SBS Chr9 21216430 G-A Homo INTERGENIC
SBS Chr10 4005968 T-A Hetero INTERGENIC
SBS Chr10 9469433 C-T Hetero INTERGENIC
SBS Chr11 16372855 G-A Hetero INTRON
SBS Chr12 604081 T-C Hetero INTRON
SBS Chr12 5761894 T-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 12526801 12526803 2
Deletion Chr1 13442528 13442531 3
Deletion Chr12 16636840 16636843 3
Deletion Chr4 28277560 28277562 2
Deletion Chr4 36385491 36385492 1
Deletion Chr1 40589312 40589315 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 28138804 Chr2 35611832
Translocation Chr5 28138806 Chr2 35609752 OsKitaake02g374700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17403366	G-A	Homo	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	31556589	G-A	Hetero	INTERGENIC
SBS	Chr1	34942547	G-T	Hetero	INTERGENIC
SBS	Chr1	34942548	C-G	Hetero	INTERGENIC
SBS	Chr2	6767753	T-C	Hetero	UTR_5_PRIME
SBS	Chr2	12670764	A-G	Hetero	INTERGENIC
SBS	Chr2	19079803	C-G	Hetero	INTERGENIC
SBS	Chr3	6851612	G-A	Homo	INTERGENIC
SBS	Chr3	12456743	C-T	Hetero	INTERGENIC
SBS	Chr3	19817976	G-C	Hetero	INTERGENIC
SBS	Chr3	24030772	G-A	Hetero	INTRON
SBS	Chr3	26222416	T-A	Hetero	INTERGENIC
SBS	Chr4	7862768	G-C	Hetero	INTERGENIC
SBS	Chr4	10835467	G-A	Homo	INTERGENIC
SBS	Chr4	10835468	A-C	Homo	INTERGENIC
SBS	Chr4	16453339	C-T	Hetero	INTERGENIC
SBS	Chr4	19785837	T-C	Hetero	INTERGENIC
SBS	Chr6	2493349	C-T	Hetero	INTERGENIC
SBS	Chr6	2874089	C-T	Hetero	INTERGENIC
SBS	Chr6	8203340	C-T	Homo	INTERGENIC
SBS	Chr6	19457593	A-T	Homo	INTERGENIC
SBS	Chr6	28904439	C-T	Homo	INTERGENIC
SBS	Chr7	15740008	T-C	Hetero	INTERGENIC
SBS	Chr7	26752401	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8397868	G-A	Hetero	INTERGENIC
SBS	Chr8	10267841	C-T	Hetero	INTERGENIC
SBS	Chr8	22306362	C-A	Hetero	INTERGENIC
SBS	Chr8	25274479	T-C	Homo	INTERGENIC
SBS	Chr9	4502794	G-A	Hetero	INTERGENIC
SBS	Chr9	5934305	G-T	Hetero	INTERGENIC
SBS	Chr9	21216430	G-A	Homo	INTERGENIC
SBS	Chr10	4005968	T-A	Hetero	INTERGENIC
SBS	Chr10	9469433	C-T	Hetero	INTERGENIC
SBS	Chr11	16372855	G-A	Hetero	INTRON
SBS	Chr12	604081	T-C	Hetero	INTRON
SBS	Chr12	5761894	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	12526801	12526803	2
Deletion	Chr1	13442528	13442531	3
Deletion	Chr12	16636840	16636843	3
Deletion	Chr4	28277560	28277562	2
Deletion	Chr4	36385491	36385492	1
Deletion	Chr1	40589312	40589315	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	28138804	Chr2	35611832
Translocation	Chr5	28138806	Chr2	35609752	OsKitaake02g374700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes