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Mutant Information

Mutant Name	FN3513-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3513-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13606547 A-C Hetero INTERGENIC
SBS Chr1 21222168 G-C Hetero INTERGENIC
SBS Chr1 31558501 T-A Homo INTERGENIC
SBS Chr1 38160686 C-T Hetero INTERGENIC
SBS Chr2 28050873 T-A Hetero INTERGENIC
SBS Chr3 504684 G-A Hetero INTERGENIC
SBS Chr3 14948295 A-G Hetero INTRON
SBS Chr3 18400350 G-A Hetero INTRON
SBS Chr3 29657617 A-C Hetero INTRON
SBS Chr3 34130698 G-A Hetero INTERGENIC
SBS Chr4 22760041 C-G Hetero INTERGENIC
SBS Chr5 2403819 G-A Homo SYNONYMOUS_CODING
SBS Chr5 13946816 A-G Homo INTERGENIC
SBS Chr5 29784733 T-A Hetero INTERGENIC
SBS Chr6 30720768 T-A Homo INTERGENIC
SBS Chr7 21089828 G-T Hetero INTERGENIC
SBS Chr8 3099723 C-T Hetero INTERGENIC
SBS Chr9 2902034 C-T Homo INTERGENIC
SBS Chr9 9326924 A-G Homo NON_SYNONYMOUS_CODING OsKitaake09g056000
SBS Chr9 16624475 G-A Hetero INTERGENIC
SBS Chr9 20065582 A-G Hetero INTERGENIC
SBS Chr10 15442797 G-A Homo SYNONYMOUS_CODING
SBS Chr11 10706124 T-A Hetero INTERGENIC
SBS Chr11 12405729 G-T Hetero INTERGENIC
SBS Chr11 15878725 C-A Hetero INTERGENIC
SBS Chr11 18656254 G-A Hetero INTERGENIC
SBS Chr11 20650353 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 6315383 6315384 1
Deletion Chr2 9392019 9392022 3
Deletion Chr3 11849496 11849506 10
Deletion Chr6 14199904 14199913 9
Deletion Chr12 18229828 18229843 15
Deletion Chr5 20783082 20783083 1
Deletion Chr11 24772146 24772153 7
Deletion Chr11 26979201 26979202 1
Deletion Chr11 26979682 26979683 1
Deletion Chr4 30319031 30319052 21

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 17141437 17141440 2
Insertion Chr1 17304795 17304798 2
Insertion Chr3 11386 11456 69

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 16539355 Chr6 20885682
Translocation Chr11 16539607 Chr6 20885683

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13606547	A-C	Hetero	INTERGENIC
SBS	Chr1	21222168	G-C	Hetero	INTERGENIC
SBS	Chr1	31558501	T-A	Homo	INTERGENIC
SBS	Chr1	38160686	C-T	Hetero	INTERGENIC
SBS	Chr2	28050873	T-A	Hetero	INTERGENIC
SBS	Chr3	504684	G-A	Hetero	INTERGENIC
SBS	Chr3	14948295	A-G	Hetero	INTRON
SBS	Chr3	18400350	G-A	Hetero	INTRON
SBS	Chr3	29657617	A-C	Hetero	INTRON
SBS	Chr3	34130698	G-A	Hetero	INTERGENIC
SBS	Chr4	22760041	C-G	Hetero	INTERGENIC
SBS	Chr5	2403819	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	13946816	A-G	Homo	INTERGENIC
SBS	Chr5	29784733	T-A	Hetero	INTERGENIC
SBS	Chr6	30720768	T-A	Homo	INTERGENIC
SBS	Chr7	21089828	G-T	Hetero	INTERGENIC
SBS	Chr8	3099723	C-T	Hetero	INTERGENIC
SBS	Chr9	2902034	C-T	Homo	INTERGENIC
SBS	Chr9	9326924	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g056000
SBS	Chr9	16624475	G-A	Hetero	INTERGENIC
SBS	Chr9	20065582	A-G	Hetero	INTERGENIC
SBS	Chr10	15442797	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	10706124	T-A	Hetero	INTERGENIC
SBS	Chr11	12405729	G-T	Hetero	INTERGENIC
SBS	Chr11	15878725	C-A	Hetero	INTERGENIC
SBS	Chr11	18656254	G-A	Hetero	INTERGENIC
SBS	Chr11	20650353	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	6315383	6315384	1
Deletion	Chr2	9392019	9392022	3
Deletion	Chr3	11849496	11849506	10
Deletion	Chr6	14199904	14199913	9
Deletion	Chr12	18229828	18229843	15
Deletion	Chr5	20783082	20783083	1
Deletion	Chr11	24772146	24772153	7
Deletion	Chr11	26979201	26979202	1
Deletion	Chr11	26979682	26979683	1
Deletion	Chr4	30319031	30319052	21

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16539355	Chr6	20885682
Translocation	Chr11	16539607	Chr6	20885683

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes