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Mutant Information

Mutant Name	FN3514-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3514-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 59

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5638665	C-A	Hetero	INTERGENIC
SBS	Chr1	5638667	C-T	Hetero	INTERGENIC
SBS	Chr1	23436289	G-A	Homo	INTRON
SBS	Chr1	25165322	T-C	Homo	INTERGENIC
SBS	Chr1	27639102	G-A	Hetero	INTERGENIC
SBS	Chr1	27654049	C-T	Homo	INTERGENIC
SBS	Chr1	37406191	T-C	Hetero	INTERGENIC
SBS	Chr2	559549	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3692803	G-T	Hetero	INTERGENIC
SBS	Chr2	7919118	C-T	Hetero	INTERGENIC
SBS	Chr2	9044740	C-T	Hetero	INTERGENIC
SBS	Chr2	10894194	C-A	Hetero	INTERGENIC
SBS	Chr2	30319567	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	6072635	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g087100
SBS	Chr3	14342829	C-T	Hetero	INTERGENIC
SBS	Chr3	17779018	G-T	Homo	INTERGENIC
SBS	Chr3	26466503	C-T	Homo	INTRON
SBS	Chr3	30243285	A-T	Homo	INTRON
SBS	Chr4	3230773	T-A	Hetero	INTRON
SBS	Chr4	11428407	G-A	Homo	INTERGENIC
SBS	Chr4	12475077	G-A	Hetero	INTERGENIC
SBS	Chr4	17594898	G-A	Hetero	INTERGENIC
SBS	Chr4	18124012	C-T	Homo	INTERGENIC
SBS	Chr4	26511103	G-T	Hetero	INTERGENIC
SBS	Chr4	32412822	A-G	Hetero	INTERGENIC
SBS	Chr5	11432102	A-G	Hetero	INTERGENIC
SBS	Chr6	3776809	G-A	Homo	INTERGENIC
SBS	Chr6	16658328	G-A	Hetero	INTERGENIC
SBS	Chr6	19690669	C-T	Hetero	INTERGENIC
SBS	Chr6	25312446	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g224400
SBS	Chr6	25719526	G-A	Homo	INTRON
SBS	Chr7	10385456	G-A	Homo	INTERGENIC
SBS	Chr8	2271178	T-C	Homo	INTERGENIC
SBS	Chr8	9755741	C-T	Hetero	INTERGENIC
SBS	Chr8	26448793	C-A	Hetero	INTERGENIC
SBS	Chr9	1311423	G-T	Hetero	INTERGENIC
SBS	Chr9	2128885	C-T	Hetero	INTERGENIC
SBS	Chr9	2614888	C-T	Hetero	INTERGENIC
SBS	Chr9	5651453	C-T	Hetero	INTERGENIC
SBS	Chr9	6298409	G-A	Hetero	INTERGENIC
SBS	Chr9	8852990	G-T	Hetero	INTERGENIC
SBS	Chr9	9158475	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	15265234	G-A	Homo	INTERGENIC
SBS	Chr9	15668042	C-T	Homo	INTERGENIC
SBS	Chr10	2418218	C-T	Homo	INTERGENIC
SBS	Chr10	10111079	G-T	Hetero	INTERGENIC
SBS	Chr10	18232277	C-A	Hetero	STOP_GAINED	OsKitaake10g128900
SBS	Chr10	19687922	G-A	Hetero	INTERGENIC
SBS	Chr10	21207338	C-A	Hetero	INTERGENIC
SBS	Chr11	9643880	C-A	Hetero	INTERGENIC
SBS	Chr11	22429464	G-A	Hetero	INTERGENIC
SBS	Chr12	5157358	A-T	Hetero	INTERGENIC
SBS	Chr12	5802592	T-A	Hetero	UTR_5_PRIME
SBS	Chr12	9764991	C-T	Hetero	INTERGENIC
SBS	Chr12	19117225	A-T	Hetero	INTERGENIC
SBS	Chr12	19409947	G-A	Hetero	INTERGENIC
SBS	Chr12	21280589	T-C	Hetero	INTERGENIC
SBS	Chr12	25773738	C-T	Hetero	INTERGENIC
SBS	Chr12	26312125	C-T	Hetero	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1200317	1200324	7	OsKitaake08g015700
Deletion	Chr2	5640665	5640677	12
Deletion	Chr9	8684001	8765000	80999	4
Deletion	Chr9	9020001	9033000	12999	2
Deletion	Chr9	9369996	9369997	1
Deletion	Chr4	14600686	14600687	1
Deletion	Chr7	19757774	19757776	2
Deletion	Chr6	24835718	24835728	10
Deletion	Chr5	27962707	27962711	4
Deletion	Chr3	30239263	30239267	4
Deletion	Chr3	30505412	30505414	2	OsKitaake03g320200

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	9664754	9664757	2
Insertion	Chr8	15326880	15326883	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22508129	22585547	OsKitaake11g179300

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8559518	Chr8	19205539
Translocation	Chr9	9019916	Chr8	19209173	OsKitaake09g052700
Translocation	Chr11	13953244	Chr6	24653885	OsKitaake06g218503
Translocation	Chr11	13953266	Chr6	24652955	OsKitaake06g218500
Translocation	Chr11	25900849	Chr1	8656593
Translocation	Chr11	25901096	Chr1	8656588

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes