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Mutant Information

Mutant Name	FN3515-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3515-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2115289	C-T	Homo	INTRON
SBS	Chr1	7340470	G-A	Hetero	INTERGENIC
SBS	Chr1	21201098	A-T	Hetero	INTERGENIC
SBS	Chr1	23860237	C-T	Hetero	INTERGENIC
SBS	Chr1	34557187	C-T	Hetero	INTERGENIC
SBS	Chr1	38106495	G-A	Hetero	INTERGENIC
SBS	Chr1	43484142	C-G	Hetero	INTERGENIC
SBS	Chr2	28116025	T-C	Homo	INTERGENIC
SBS	Chr2	28116027	C-A	Homo	INTERGENIC
SBS	Chr2	33059942	A-T	Homo	INTERGENIC
SBS	Chr3	16578894	G-T	Hetero	INTERGENIC
SBS	Chr3	25564590	C-A	Homo	INTERGENIC
SBS	Chr3	26535919	C-T	Hetero	INTERGENIC
SBS	Chr3	28486490	C-T	Homo	INTERGENIC
SBS	Chr4	8519635	A-C	Hetero	INTERGENIC
SBS	Chr4	33810668	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6649402	G-T	Hetero	INTERGENIC
SBS	Chr5	14756151	A-G	Hetero	INTERGENIC
SBS	Chr5	19075443	C-T	Hetero	INTERGENIC
SBS	Chr5	28952358	T-C	Homo	INTERGENIC
SBS	Chr6	8176409	C-A	Hetero	INTRON
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	29588662	G-A	Hetero	INTERGENIC
SBS	Chr7	17376764	C-T	Hetero	INTERGENIC
SBS	Chr8	3028096	A-C	Hetero	INTERGENIC
SBS	Chr8	7587906	A-T	Hetero	INTERGENIC
SBS	Chr9	8924138	G-A	Hetero	INTERGENIC
SBS	Chr10	2803914	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g023000
SBS	Chr10	21235704	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g165202
SBS	Chr10	21235705	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g165202
SBS	Chr11	13028733	G-T	Hetero	INTERGENIC
SBS	Chr11	26302031	C-A	Hetero	INTERGENIC
SBS	Chr11	26302032	T-A	Hetero	INTERGENIC
SBS	Chr11	26302033	T-C	Hetero	INTERGENIC
SBS	Chr12	3218804	G-A	Hetero	INTERGENIC
SBS	Chr12	3867189	A-G	Hetero	INTERGENIC
SBS	Chr12	14630823	G-T	Hetero	INTERGENIC
SBS	Chr12	24928407	G-C	Hetero	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr4	1530898	1530901	3
Deletion	Chr1	2497159	2497164	5
Deletion	Chr3	3947402	3947404	2
Deletion	Chr7	7318674	7318675	1
Deletion	Chr1	9486278	9486279	1
Deletion	Chr1	11226244	11226257	13
Deletion	Chr7	11298915	11298917	2
Deletion	Chr8	16362642	16362660	18
Deletion	Chr7	16773817	16773908	91
Deletion	Chr2	16878904	16878905	1
Deletion	Chr2	20805264	20805270	6
Deletion	Chr3	21281895	21281897	2
Deletion	Chr10	21286001	21368000	81999	8
Deletion	Chr10	21434001	21471000	36999	5
Deletion	Chr5	23326605	23326610	5
Deletion	Chr2	23728912	23728926	14
Deletion	Chr5	24304885	24304894	9	OsKitaake05g217200
Deletion	Chr2	24475342	24475348	6
Deletion	Chr2	26910661	26910667	6
Deletion	Chr4	27835071	27835077	6
Deletion	Chr2	30466046	30466047	1
Deletion	Chr2	30649925	30649933	8
Deletion	Chr2	33059952	33059953	1
Deletion	Chr3	35064584	35064592	8
Deletion	Chr3	35084642	35084644	2	OsKitaake03g383900

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	2131756	2131759	2
Insertion	Chr11	25738628	25738631	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	73110	378731	2
Inversion	Chr10	21367002	21467365

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	378712	Chr1	43527127	2