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Mutant Information

Mutant Name	FN3516-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3516-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12235749 C-T Hetero INTERGENIC
SBS Chr1 17888890 C-T Hetero INTERGENIC
SBS Chr2 11970338 T-A Hetero UTR_3_PRIME
SBS Chr2 12982761 T-C Hetero INTERGENIC
SBS Chr2 17050698 G-A Hetero INTERGENIC
SBS Chr2 22576201 C-A Hetero INTERGENIC
SBS Chr2 23425089 C-T Hetero INTRON
SBS Chr3 8937139 C-T Homo INTERGENIC
SBS Chr3 8937140 A-T Homo INTERGENIC
SBS Chr3 14698454 A-G Homo INTERGENIC
SBS Chr3 31067015 G-A Hetero INTRON
SBS Chr3 35712174 A-G Hetero INTERGENIC
SBS Chr4 7644561 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g038400
SBS Chr4 14716936 C-T Homo INTERGENIC
SBS Chr4 15982933 C-T Hetero INTERGENIC
SBS Chr4 20852530 T-A Homo INTERGENIC
SBS Chr4 22259649 G-A Homo INTERGENIC
SBS Chr4 25902548 T-C Hetero INTERGENIC
SBS Chr4 31895398 A-G Hetero INTERGENIC
SBS Chr4 33039963 G-A Hetero INTERGENIC
SBS Chr4 33688868 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g279600
SBS Chr4 34079993 C-T Hetero INTERGENIC
SBS Chr5 19015401 A-C Homo INTERGENIC
SBS Chr6 4103542 T-A Hetero INTRON
SBS Chr6 15479492 C-T Hetero INTERGENIC
SBS Chr6 20889094 A-C Homo INTERGENIC
SBS Chr6 27644582 A-C Hetero INTERGENIC
SBS Chr6 28877222 G-A Homo INTERGENIC
SBS Chr7 6787048 C-T Hetero INTERGENIC
SBS Chr7 7335505 G-A Hetero INTERGENIC
SBS Chr7 16609190 G-A Hetero UTR_5_PRIME
SBS Chr7 17277867 C-T Hetero INTERGENIC
SBS Chr8 9078949 C-T Hetero INTERGENIC
SBS Chr8 9760971 G-A Hetero INTERGENIC
SBS Chr8 14240525 G-A Hetero INTERGENIC
SBS Chr8 20958032 A-T Hetero INTERGENIC
SBS Chr9 9395168 G-A Hetero INTERGENIC
SBS Chr9 18065109 C-T Hetero INTERGENIC
SBS Chr9 22257455 G-C Homo INTERGENIC
SBS Chr10 5104281 A-T Homo INTERGENIC
SBS Chr10 8352627 G-A Homo INTERGENIC
SBS Chr10 17396726 C-T Hetero INTERGENIC
SBS Chr10 22015932 G-T Hetero INTERGENIC
SBS Chr11 432435 C-A Homo INTERGENIC
SBS Chr11 432436 T-C Homo INTERGENIC
SBS Chr11 3306695 C-T Hetero INTERGENIC
SBS Chr11 19302795 G-A Homo INTERGENIC
SBS Chr11 20796277 C-G Hetero INTRON
SBS Chr11 20820369 T-A Hetero INTERGENIC
SBS Chr11 25163607 C-T Hetero UTR_5_PRIME
SBS Chr11 25577025 G-A Homo INTERGENIC
SBS Chr11 26414937 A-C Hetero INTERGENIC
SBS Chr11 27020284 G-A Homo INTRON
SBS Chr12 10001584 C-A Hetero INTERGENIC
SBS Chr12 13119822 G-A Hetero INTERGENIC
SBS Chr12 19142154 C-T Hetero INTRON
SBS Chr12 21647017 C-A Homo INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2025240 2025242 2
Deletion Chr12 2758060 2758061 1
Deletion Chr10 3720674 3720685 11
Deletion Chr7 3895790 3895796 6
Deletion Chr12 7256822 7256824 2 OsKitaake12g080600
Deletion Chr4 10534525 10534540 15
Deletion Chr5 11033467 11033469 2 OsKitaake05g094200
Deletion Chr6 13411304 13411305 1
Deletion Chr1 13644121 13644122 1
Deletion Chr10 15229190 15229213 23
Deletion Chr6 16664145 16664146 1
Deletion Chr6 17533531 17533534 3
Deletion Chr11 18530547 18530557 10
Deletion Chr11 18599534 18599546 12
Deletion Chr4 18660616 18660624 8
Deletion Chr10 18876028 18876030 2
Deletion Chr6 19538001 19568000 29999
Deletion Chr3 21063502 21063504 2
Deletion Chr3 22268486 22268488 2
Deletion Chr8 24520001 24543000 22999 2
Deletion Chr8 24824288 24824290 2
Deletion Chr1 25086590 25086592 2
Deletion Chr12 26894178 26894179 1
Deletion Chr3 27484333 27484334 1 OsKitaake03g283700
Deletion Chr1 32109620 32109621 1
Deletion Chr1 34314750 34314752 2
Deletion Chr3 35566001 35590000 23999 6

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27630046 27630049 2
Insertion Chr4 9393085 9393088 2
Insertion Chr6 21699383 21699386 2
Insertion Chr11 1506511 1506514 2
Insertion Chr11 1940349 1940352 2
Insertion Chr11 28449198 28449206 7
Insertion Chr12 774026 774029 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12235749	C-T	Hetero	INTERGENIC
SBS	Chr1	17888890	C-T	Hetero	INTERGENIC
SBS	Chr2	11970338	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	12982761	T-C	Hetero	INTERGENIC
SBS	Chr2	17050698	G-A	Hetero	INTERGENIC
SBS	Chr2	22576201	C-A	Hetero	INTERGENIC
SBS	Chr2	23425089	C-T	Hetero	INTRON
SBS	Chr3	8937139	C-T	Homo	INTERGENIC
SBS	Chr3	8937140	A-T	Homo	INTERGENIC
SBS	Chr3	14698454	A-G	Homo	INTERGENIC
SBS	Chr3	31067015	G-A	Hetero	INTRON
SBS	Chr3	35712174	A-G	Hetero	INTERGENIC
SBS	Chr4	7644561	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g038400
SBS	Chr4	14716936	C-T	Homo	INTERGENIC
SBS	Chr4	15982933	C-T	Hetero	INTERGENIC
SBS	Chr4	20852530	T-A	Homo	INTERGENIC
SBS	Chr4	22259649	G-A	Homo	INTERGENIC
SBS	Chr4	25902548	T-C	Hetero	INTERGENIC
SBS	Chr4	31895398	A-G	Hetero	INTERGENIC
SBS	Chr4	33039963	G-A	Hetero	INTERGENIC
SBS	Chr4	33688868	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g279600
SBS	Chr4	34079993	C-T	Hetero	INTERGENIC
SBS	Chr5	19015401	A-C	Homo	INTERGENIC
SBS	Chr6	4103542	T-A	Hetero	INTRON
SBS	Chr6	15479492	C-T	Hetero	INTERGENIC
SBS	Chr6	20889094	A-C	Homo	INTERGENIC
SBS	Chr6	27644582	A-C	Hetero	INTERGENIC
SBS	Chr6	28877222	G-A	Homo	INTERGENIC
SBS	Chr7	6787048	C-T	Hetero	INTERGENIC
SBS	Chr7	7335505	G-A	Hetero	INTERGENIC
SBS	Chr7	16609190	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	17277867	C-T	Hetero	INTERGENIC
SBS	Chr8	9078949	C-T	Hetero	INTERGENIC
SBS	Chr8	9760971	G-A	Hetero	INTERGENIC
SBS	Chr8	14240525	G-A	Hetero	INTERGENIC
SBS	Chr8	20958032	A-T	Hetero	INTERGENIC
SBS	Chr9	9395168	G-A	Hetero	INTERGENIC
SBS	Chr9	18065109	C-T	Hetero	INTERGENIC
SBS	Chr9	22257455	G-C	Homo	INTERGENIC
SBS	Chr10	5104281	A-T	Homo	INTERGENIC
SBS	Chr10	8352627	G-A	Homo	INTERGENIC
SBS	Chr10	17396726	C-T	Hetero	INTERGENIC
SBS	Chr10	22015932	G-T	Hetero	INTERGENIC
SBS	Chr11	432435	C-A	Homo	INTERGENIC
SBS	Chr11	432436	T-C	Homo	INTERGENIC
SBS	Chr11	3306695	C-T	Hetero	INTERGENIC
SBS	Chr11	19302795	G-A	Homo	INTERGENIC
SBS	Chr11	20796277	C-G	Hetero	INTRON
SBS	Chr11	20820369	T-A	Hetero	INTERGENIC
SBS	Chr11	25163607	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	25577025	G-A	Homo	INTERGENIC
SBS	Chr11	26414937	A-C	Hetero	INTERGENIC
SBS	Chr11	27020284	G-A	Homo	INTRON
SBS	Chr12	10001584	C-A	Hetero	INTERGENIC
SBS	Chr12	13119822	G-A	Hetero	INTERGENIC
SBS	Chr12	19142154	C-T	Hetero	INTRON
SBS	Chr12	21647017	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2025240	2025242	2
Deletion	Chr12	2758060	2758061	1
Deletion	Chr10	3720674	3720685	11
Deletion	Chr7	3895790	3895796	6
Deletion	Chr12	7256822	7256824	2	OsKitaake12g080600
Deletion	Chr4	10534525	10534540	15
Deletion	Chr5	11033467	11033469	2	OsKitaake05g094200
Deletion	Chr6	13411304	13411305	1
Deletion	Chr1	13644121	13644122	1
Deletion	Chr10	15229190	15229213	23
Deletion	Chr6	16664145	16664146	1
Deletion	Chr6	17533531	17533534	3
Deletion	Chr11	18530547	18530557	10
Deletion	Chr11	18599534	18599546	12
Deletion	Chr4	18660616	18660624	8
Deletion	Chr10	18876028	18876030	2
Deletion	Chr6	19538001	19568000	29999
Deletion	Chr3	21063502	21063504	2
Deletion	Chr3	22268486	22268488	2
Deletion	Chr8	24520001	24543000	22999	2
Deletion	Chr8	24824288	24824290	2
Deletion	Chr1	25086590	25086592	2
Deletion	Chr12	26894178	26894179	1
Deletion	Chr3	27484333	27484334	1	OsKitaake03g283700
Deletion	Chr1	32109620	32109621	1
Deletion	Chr1	34314750	34314752	2
Deletion	Chr3	35566001	35590000	23999	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes