Search Kitaake

Mutant Information

Mutant Name	FN3517-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3517-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 205757 G-C Homo INTRON
SBS Chr1 7435628 A-G Hetero INTERGENIC
SBS Chr1 10868302 C-T Hetero INTERGENIC
SBS Chr1 18701955 A-C Homo INTERGENIC
SBS Chr1 23840235 G-C Homo INTERGENIC
SBS Chr1 39610149 A-G Hetero INTERGENIC
SBS Chr2 9349720 C-T Hetero INTERGENIC
SBS Chr2 15335376 T-C Hetero INTERGENIC
SBS Chr2 25984403 C-A Hetero INTERGENIC
SBS Chr3 4621635 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g067000
SBS Chr3 9761187 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g133000
SBS Chr3 29643010 A-G Homo INTERGENIC
SBS Chr3 32242831 G-A Homo INTERGENIC
SBS Chr3 35048777 C-A Hetero INTRON
SBS Chr4 6771281 G-T Homo INTERGENIC
SBS Chr4 12243549 A-C Homo INTERGENIC
SBS Chr4 24162696 G-A Hetero UTR_3_PRIME
SBS Chr5 939967 C-T Hetero INTERGENIC
SBS Chr5 10660677 C-T Hetero INTERGENIC
SBS Chr5 11773130 T-A Hetero INTERGENIC
SBS Chr6 14308554 G-A Hetero INTERGENIC
SBS Chr6 21069480 G-A Hetero INTERGENIC
SBS Chr6 23425174 C-T Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 5375782 G-A Hetero INTERGENIC
SBS Chr7 8505620 T-A Hetero INTERGENIC
SBS Chr7 8505621 A-T Hetero INTERGENIC
SBS Chr7 28154045 G-A Homo INTERGENIC
SBS Chr8 7738229 T-C Hetero INTERGENIC
SBS Chr8 14593874 C-T Hetero INTERGENIC
SBS Chr8 16423402 T-C Hetero INTERGENIC
SBS Chr9 5907527 C-T Homo INTERGENIC
SBS Chr9 11943179 G-A Hetero INTERGENIC
SBS Chr9 22411158 G-A Homo INTERGENIC
SBS Chr10 2469875 G-T Hetero INTERGENIC
SBS Chr10 3742040 G-T Hetero INTERGENIC
SBS Chr10 7775585 G-T Homo INTERGENIC
SBS Chr10 21542249 G-A Hetero INTERGENIC
SBS Chr11 6221004 G-A Homo INTERGENIC
SBS Chr11 12945753 C-A Homo INTERGENIC
SBS Chr11 13251204 C-T Homo INTERGENIC
SBS Chr11 19602701 C-T Hetero INTERGENIC
SBS Chr12 7633794 G-A Hetero INTERGENIC
SBS Chr12 13384732 A-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1223724 1223730 6
Deletion Chr9 2319641 2319643 2
Deletion Chr7 4426001 4514000 87999 7
Deletion Chr7 4521001 4578000 56999 5
Deletion Chr6 7838388 7838402 14
Deletion Chr5 10134471 10134473 2
Deletion Chr5 12076001 12123000 46999 2
Deletion Chr3 16194485 16194495 10
Deletion Chr1 16581706 16581710 4
Deletion Chr12 21813155 21813161 6
Deletion Chr11 28245334 28245336 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11619249 11619252 2
Insertion Chr7 8251469 8251472 2
Insertion Chr7 24265846 24265849 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4151794 4158418 OsKitaake07g052600
Inversion Chr7 4151942 4158442 OsKitaake07g052600
Inversion Chr7 4202552 5019357 OsKitaake07g061201
Inversion Chr7 4202564 5019361 OsKitaake07g061201
Inversion Chr5 9641426 9924646 OsKitaake05g088600
Inversion Chr5 9927757 10129139

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	205757	G-C	Homo	INTRON
SBS	Chr1	7435628	A-G	Hetero	INTERGENIC
SBS	Chr1	10868302	C-T	Hetero	INTERGENIC
SBS	Chr1	18701955	A-C	Homo	INTERGENIC
SBS	Chr1	23840235	G-C	Homo	INTERGENIC
SBS	Chr1	39610149	A-G	Hetero	INTERGENIC
SBS	Chr2	9349720	C-T	Hetero	INTERGENIC
SBS	Chr2	15335376	T-C	Hetero	INTERGENIC
SBS	Chr2	25984403	C-A	Hetero	INTERGENIC
SBS	Chr3	4621635	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g067000
SBS	Chr3	9761187	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g133000
SBS	Chr3	29643010	A-G	Homo	INTERGENIC
SBS	Chr3	32242831	G-A	Homo	INTERGENIC
SBS	Chr3	35048777	C-A	Hetero	INTRON
SBS	Chr4	6771281	G-T	Homo	INTERGENIC
SBS	Chr4	12243549	A-C	Homo	INTERGENIC
SBS	Chr4	24162696	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	939967	C-T	Hetero	INTERGENIC
SBS	Chr5	10660677	C-T	Hetero	INTERGENIC
SBS	Chr5	11773130	T-A	Hetero	INTERGENIC
SBS	Chr6	14308554	G-A	Hetero	INTERGENIC
SBS	Chr6	21069480	G-A	Hetero	INTERGENIC
SBS	Chr6	23425174	C-T	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	5375782	G-A	Hetero	INTERGENIC
SBS	Chr7	8505620	T-A	Hetero	INTERGENIC
SBS	Chr7	8505621	A-T	Hetero	INTERGENIC
SBS	Chr7	28154045	G-A	Homo	INTERGENIC
SBS	Chr8	7738229	T-C	Hetero	INTERGENIC
SBS	Chr8	14593874	C-T	Hetero	INTERGENIC
SBS	Chr8	16423402	T-C	Hetero	INTERGENIC
SBS	Chr9	5907527	C-T	Homo	INTERGENIC
SBS	Chr9	11943179	G-A	Hetero	INTERGENIC
SBS	Chr9	22411158	G-A	Homo	INTERGENIC
SBS	Chr10	2469875	G-T	Hetero	INTERGENIC
SBS	Chr10	3742040	G-T	Hetero	INTERGENIC
SBS	Chr10	7775585	G-T	Homo	INTERGENIC
SBS	Chr10	21542249	G-A	Hetero	INTERGENIC
SBS	Chr11	6221004	G-A	Homo	INTERGENIC
SBS	Chr11	12945753	C-A	Homo	INTERGENIC
SBS	Chr11	13251204	C-T	Homo	INTERGENIC
SBS	Chr11	19602701	C-T	Hetero	INTERGENIC
SBS	Chr12	7633794	G-A	Hetero	INTERGENIC
SBS	Chr12	13384732	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1223724	1223730	6
Deletion	Chr9	2319641	2319643	2
Deletion	Chr7	4426001	4514000	87999	7
Deletion	Chr7	4521001	4578000	56999	5
Deletion	Chr6	7838388	7838402	14
Deletion	Chr5	10134471	10134473	2
Deletion	Chr5	12076001	12123000	46999	2
Deletion	Chr3	16194485	16194495	10
Deletion	Chr1	16581706	16581710	4
Deletion	Chr12	21813155	21813161	6
Deletion	Chr11	28245334	28245336	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4151794	4158418	OsKitaake07g052600
Inversion	Chr7	4151942	4158442	OsKitaake07g052600
Inversion	Chr7	4202552	5019357	OsKitaake07g061201
Inversion	Chr7	4202564	5019361	OsKitaake07g061201
Inversion	Chr5	9641426	9924646	OsKitaake05g088600
Inversion	Chr5	9927757	10129139

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes