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Mutant Information

Mutant Name	FN3518-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3518-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21666974 A-G Hetero INTERGENIC
SBS Chr2 16019667 G-A Hetero INTERGENIC
SBS Chr2 20966335 G-A Hetero INTERGENIC
SBS Chr2 29921267 T-C Homo SYNONYMOUS_CODING
SBS Chr3 11990187 C-T Homo INTERGENIC
SBS Chr3 15400923 T-G Homo INTERGENIC
SBS Chr3 20451960 T-A Homo INTERGENIC
SBS Chr3 31370472 G-C Hetero INTRON
SBS Chr4 16974755 C-T Hetero INTERGENIC
SBS Chr5 9032813 C-T Homo INTERGENIC
SBS Chr5 12708595 C-T Hetero INTERGENIC
SBS Chr5 13893404 T-A Hetero INTERGENIC
SBS Chr5 25931310 C-T Homo INTERGENIC
SBS Chr6 560594 A-G Homo INTRON
SBS Chr6 1962221 T-A Homo INTERGENIC
SBS Chr6 21005577 C-G Hetero INTERGENIC
SBS Chr6 25951420 C-T Hetero INTERGENIC
SBS Chr7 4846968 T-G Hetero INTERGENIC
SBS Chr7 4846969 G-T Hetero INTERGENIC
SBS Chr7 7238037 T-C Hetero INTERGENIC
SBS Chr7 15738518 G-A Hetero INTERGENIC
SBS Chr7 25107115 T-C Hetero INTERGENIC
SBS Chr7 28472990 A-T Homo INTERGENIC
SBS Chr8 2146391 C-T Hetero INTERGENIC
SBS Chr8 2662747 G-A Hetero INTERGENIC
SBS Chr8 3303214 T-A Hetero INTERGENIC
SBS Chr8 11677303 A-C Homo INTERGENIC
SBS Chr9 3265692 C-T Homo SYNONYMOUS_CODING
SBS Chr9 20493811 G-A Hetero INTERGENIC
SBS Chr10 5651985 T-A Hetero INTERGENIC
SBS Chr10 20363462 C-T Homo INTERGENIC
SBS Chr11 10212644 C-A Homo INTERGENIC
SBS Chr11 24179564 G-A Hetero INTRON
SBS Chr11 26126054 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g211100
SBS Chr11 26126055 C-A Hetero SYNONYMOUS_CODING
SBS Chr12 4015985 C-T Homo INTERGENIC
SBS Chr12 4544600 C-G Homo INTERGENIC
SBS Chr12 21038479 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 520761 520767 6
Deletion Chr8 1258862 1258869 7
Deletion Chr11 3939251 3939254 3
Deletion Chr1 9643001 9655000 11999 OsKitaake01g123400
Deletion Chr1 10393103 10393118 15
Deletion Chr8 11571001 11634000 62999 OsKitaake08g102400
Deletion Chr10 15762366 15762454 88
Deletion Chr3 16316698 16316699 1
Deletion Chr6 17154001 17188000 33999 4
Deletion Chr3 26655144 26655146 2
Deletion Chr3 28041250 28041253 3
Deletion Chr3 30766697 30766718 21
Deletion Chr3 31987001 32088000 100999 14
Deletion Chr3 33288252 33288271 19
Deletion Chr2 33411098 33411103 5
Deletion Chr2 35626481 35626490 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34009709 34009712 2
Insertion Chr7 4078438 4078442 3
Insertion Chr7 24559767 24559770 2
Insertion Chr6 86438 86441 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 3947520 4060074 OsKitaake10g030666
Inversion Chr10 4134133 4288842 OsKitaake10g031500

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4060080 Chr4 17955656 OsKitaake10g030666
Translocation Chr10 4065145 Chr4 17955669
Translocation Chr10 4134134 Chr4 27592371 OsKitaake10g031500
Translocation Chr10 4288842 Chr4 27591941
Translocation Chr11 23443910 Chr10 4134126 OsKitaake10g031500
Translocation Chr11 23506152 Chr10 4133294 OsKitaake10g031500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21666974	A-G	Hetero	INTERGENIC
SBS	Chr2	16019667	G-A	Hetero	INTERGENIC
SBS	Chr2	20966335	G-A	Hetero	INTERGENIC
SBS	Chr2	29921267	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	11990187	C-T	Homo	INTERGENIC
SBS	Chr3	15400923	T-G	Homo	INTERGENIC
SBS	Chr3	20451960	T-A	Homo	INTERGENIC
SBS	Chr3	31370472	G-C	Hetero	INTRON
SBS	Chr4	16974755	C-T	Hetero	INTERGENIC
SBS	Chr5	9032813	C-T	Homo	INTERGENIC
SBS	Chr5	12708595	C-T	Hetero	INTERGENIC
SBS	Chr5	13893404	T-A	Hetero	INTERGENIC
SBS	Chr5	25931310	C-T	Homo	INTERGENIC
SBS	Chr6	560594	A-G	Homo	INTRON
SBS	Chr6	1962221	T-A	Homo	INTERGENIC
SBS	Chr6	21005577	C-G	Hetero	INTERGENIC
SBS	Chr6	25951420	C-T	Hetero	INTERGENIC
SBS	Chr7	4846968	T-G	Hetero	INTERGENIC
SBS	Chr7	4846969	G-T	Hetero	INTERGENIC
SBS	Chr7	7238037	T-C	Hetero	INTERGENIC
SBS	Chr7	15738518	G-A	Hetero	INTERGENIC
SBS	Chr7	25107115	T-C	Hetero	INTERGENIC
SBS	Chr7	28472990	A-T	Homo	INTERGENIC
SBS	Chr8	2146391	C-T	Hetero	INTERGENIC
SBS	Chr8	2662747	G-A	Hetero	INTERGENIC
SBS	Chr8	3303214	T-A	Hetero	INTERGENIC
SBS	Chr8	11677303	A-C	Homo	INTERGENIC
SBS	Chr9	3265692	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	20493811	G-A	Hetero	INTERGENIC
SBS	Chr10	5651985	T-A	Hetero	INTERGENIC
SBS	Chr10	20363462	C-T	Homo	INTERGENIC
SBS	Chr11	10212644	C-A	Homo	INTERGENIC
SBS	Chr11	24179564	G-A	Hetero	INTRON
SBS	Chr11	26126054	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g211100
SBS	Chr11	26126055	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	4015985	C-T	Homo	INTERGENIC
SBS	Chr12	4544600	C-G	Homo	INTERGENIC
SBS	Chr12	21038479	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	520761	520767	6
Deletion	Chr8	1258862	1258869	7
Deletion	Chr11	3939251	3939254	3
Deletion	Chr1	9643001	9655000	11999	OsKitaake01g123400
Deletion	Chr1	10393103	10393118	15
Deletion	Chr8	11571001	11634000	62999	OsKitaake08g102400
Deletion	Chr10	15762366	15762454	88
Deletion	Chr3	16316698	16316699	1
Deletion	Chr6	17154001	17188000	33999	4
Deletion	Chr3	26655144	26655146	2
Deletion	Chr3	28041250	28041253	3
Deletion	Chr3	30766697	30766718	21
Deletion	Chr3	31987001	32088000	100999	14
Deletion	Chr3	33288252	33288271	19
Deletion	Chr2	33411098	33411103	5
Deletion	Chr2	35626481	35626490	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3947520	4060074	OsKitaake10g030666
Inversion	Chr10	4134133	4288842	OsKitaake10g031500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes