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Mutant Information

Mutant Name	FN3519-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3519-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5388839	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g069700
SBS	Chr2	7464840	C-T	Homo	INTERGENIC
SBS	Chr3	36245999	C-T	Hetero	INTERGENIC
SBS	Chr4	5280565	T-C	Homo	INTERGENIC
SBS	Chr4	15860394	C-T	Homo	INTERGENIC
SBS	Chr6	6379751	C-T	Homo	INTERGENIC
SBS	Chr7	12872367	C-T	Hetero	INTERGENIC
SBS	Chr7	28482713	C-T	Homo	INTERGENIC
SBS	Chr7	28482714	T-A	Homo	INTERGENIC
SBS	Chr8	15648570	T-C	Hetero	INTERGENIC
SBS	Chr8	27053687	G-T	Hetero	UTR_5_PRIME
SBS	Chr10	7226983	T-A	Hetero	INTERGENIC
SBS	Chr10	7437799	C-T	Hetero	INTERGENIC
SBS	Chr10	8998313	A-C	Hetero	INTRON
SBS	Chr10	12164287	C-T	Hetero	INTERGENIC
SBS	Chr10	19285879	T-C	Homo	INTRON
SBS	Chr12	6012191	G-A	Homo	INTERGENIC

Deletions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2672884	2672891	7
Deletion	Chr4	5346929	5346939	10
Deletion	Chr1	6148883	6148889	6
Deletion	Chr4	8518603	8518604	1
Deletion	Chr5	12424107	12424108	1
Deletion	Chr6	14717831	14717839	8
Deletion	Chr9	17527151	17527163	12	OsKitaake09g132200

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	465798	875324
Inversion	Chr10	874757	875330
Inversion	Chr11	14044222	14824613	OsKitaake11g117600
Inversion	Chr11	14044236	14824646	OsKitaake11g117600
Inversion	Chr10	17927453	17966760	2
Inversion	Chr10	17927483	17966767	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5789371	Chr11	9024372	OsKitaake12g070000
Translocation	Chr12	5789898	Chr11	9024370	OsKitaake12g070000