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Mutant Information

Mutant Name	FN3520-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3520-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12012014 C-T Homo INTERGENIC
SBS Chr1 15689211 A-T Homo INTERGENIC
SBS Chr1 17485816 G-A Hetero INTERGENIC
SBS Chr1 26074230 A-C Hetero INTERGENIC
SBS Chr1 27384243 C-T Hetero INTERGENIC
SBS Chr1 30660461 G-T Homo INTERGENIC
SBS Chr1 37579588 T-A Hetero INTERGENIC
SBS Chr2 968113 T-C Hetero INTERGENIC
SBS Chr2 3627349 G-T Hetero INTERGENIC
SBS Chr2 37155694 A-G Homo INTERGENIC
SBS Chr3 7700727 T-C Hetero INTERGENIC
SBS Chr3 13572734 A-T Homo INTERGENIC
SBS Chr3 13781000 A-T Hetero INTERGENIC
SBS Chr4 3709562 G-A Hetero INTERGENIC
SBS Chr4 12938499 C-T Homo INTERGENIC
SBS Chr4 20845089 A-G Hetero INTERGENIC
SBS Chr4 21736300 G-T Homo INTERGENIC
SBS Chr4 29771499 C-T Hetero INTERGENIC
SBS Chr5 5110471 T-A Hetero INTERGENIC
SBS Chr5 22344406 A-T Homo INTERGENIC
SBS Chr5 28394689 C-T Hetero INTERGENIC
SBS Chr6 4130252 G-T Homo INTERGENIC
SBS Chr6 4130253 A-T Homo INTERGENIC
SBS Chr6 21750343 T-C Homo INTERGENIC
SBS Chr7 11392945 T-A Hetero INTERGENIC
SBS Chr7 13550341 C-T Hetero INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 11289007 G-C Hetero INTERGENIC
SBS Chr9 324710 G-C Hetero INTERGENIC
SBS Chr9 8128840 C-G Hetero INTERGENIC
SBS Chr9 8392661 G-A Hetero INTERGENIC
SBS Chr9 15386128 G-A Hetero INTERGENIC
SBS Chr10 4851244 C-A Hetero INTERGENIC
SBS Chr10 13148071 G-A Hetero INTERGENIC
SBS Chr10 18517881 G-A Hetero INTERGENIC
SBS Chr11 19591734 G-A Hetero INTERGENIC
SBS Chr12 2061374 C-A Hetero INTERGENIC
SBS Chr12 8253999 T-A Hetero INTERGENIC
SBS Chr12 14061807 T-C Hetero INTERGENIC
SBS Chr12 14597005 A-G Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 19878516 T-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 92089 92090 1
Deletion Chr8 407164 407169 5
Deletion Chr8 793001 817000 23999 OsKitaake08g011400
Deletion Chr10 1446595 1446596 1
Deletion Chr1 2868001 2937000 68999 11
Deletion Chr6 3753001 3767000 13999 4
Deletion Chr6 5496219 5496236 17
Deletion Chr8 7613798 7613799 1
Deletion Chr12 8340521 8340522 1
Deletion Chr8 8536501 8536509 8
Deletion Chr5 10928001 10937000 8999
Deletion Chr8 11114427 11114428 1 OsKitaake08g099400
Deletion Chr10 13147538 13147540 2
Deletion Chr2 13361215 13361217 2
Deletion Chr7 14217035 14217036 1
Deletion Chr4 18661684 18661685 1
Deletion Chr7 18883955 18883957 2
Deletion Chr8 20301151 20301163 12
Deletion Chr1 28505856 28505861 5 OsKitaake01g276600
Deletion Chr3 29348929 29348942 13 OsKitaake03g306000
Deletion Chr1 38738346 38738396 50

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2
Insertion Chr5 12532511 12532513 1
Insertion Chr10 5594179 5594182 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 799700 871707
Inversion Chr8 815755 871713
Inversion Chr10 12615059 13577100 2
Inversion Chr10 12615068 13577112 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13428921 Chr1 2868165 OsKitaake10g080600
Translocation Chr10 13428928 Chr1 2867965 OsKitaake10g080600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12012014	C-T	Homo	INTERGENIC
SBS	Chr1	15689211	A-T	Homo	INTERGENIC
SBS	Chr1	17485816	G-A	Hetero	INTERGENIC
SBS	Chr1	26074230	A-C	Hetero	INTERGENIC
SBS	Chr1	27384243	C-T	Hetero	INTERGENIC
SBS	Chr1	30660461	G-T	Homo	INTERGENIC
SBS	Chr1	37579588	T-A	Hetero	INTERGENIC
SBS	Chr2	968113	T-C	Hetero	INTERGENIC
SBS	Chr2	3627349	G-T	Hetero	INTERGENIC
SBS	Chr2	37155694	A-G	Homo	INTERGENIC
SBS	Chr3	7700727	T-C	Hetero	INTERGENIC
SBS	Chr3	13572734	A-T	Homo	INTERGENIC
SBS	Chr3	13781000	A-T	Hetero	INTERGENIC
SBS	Chr4	3709562	G-A	Hetero	INTERGENIC
SBS	Chr4	12938499	C-T	Homo	INTERGENIC
SBS	Chr4	20845089	A-G	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Homo	INTERGENIC
SBS	Chr4	29771499	C-T	Hetero	INTERGENIC
SBS	Chr5	5110471	T-A	Hetero	INTERGENIC
SBS	Chr5	22344406	A-T	Homo	INTERGENIC
SBS	Chr5	28394689	C-T	Hetero	INTERGENIC
SBS	Chr6	4130252	G-T	Homo	INTERGENIC
SBS	Chr6	4130253	A-T	Homo	INTERGENIC
SBS	Chr6	21750343	T-C	Homo	INTERGENIC
SBS	Chr7	11392945	T-A	Hetero	INTERGENIC
SBS	Chr7	13550341	C-T	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	11289007	G-C	Hetero	INTERGENIC
SBS	Chr9	324710	G-C	Hetero	INTERGENIC
SBS	Chr9	8128840	C-G	Hetero	INTERGENIC
SBS	Chr9	8392661	G-A	Hetero	INTERGENIC
SBS	Chr9	15386128	G-A	Hetero	INTERGENIC
SBS	Chr10	4851244	C-A	Hetero	INTERGENIC
SBS	Chr10	13148071	G-A	Hetero	INTERGENIC
SBS	Chr10	18517881	G-A	Hetero	INTERGENIC
SBS	Chr11	19591734	G-A	Hetero	INTERGENIC
SBS	Chr12	2061374	C-A	Hetero	INTERGENIC
SBS	Chr12	8253999	T-A	Hetero	INTERGENIC
SBS	Chr12	14061807	T-C	Hetero	INTERGENIC
SBS	Chr12	14597005	A-G	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	19878516	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	92089	92090	1
Deletion	Chr8	407164	407169	5
Deletion	Chr8	793001	817000	23999	OsKitaake08g011400
Deletion	Chr10	1446595	1446596	1
Deletion	Chr1	2868001	2937000	68999	11
Deletion	Chr6	3753001	3767000	13999	4
Deletion	Chr6	5496219	5496236	17
Deletion	Chr8	7613798	7613799	1
Deletion	Chr12	8340521	8340522	1
Deletion	Chr8	8536501	8536509	8
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr8	11114427	11114428	1	OsKitaake08g099400
Deletion	Chr10	13147538	13147540	2
Deletion	Chr2	13361215	13361217	2
Deletion	Chr7	14217035	14217036	1
Deletion	Chr4	18661684	18661685	1
Deletion	Chr7	18883955	18883957	2
Deletion	Chr8	20301151	20301163	12
Deletion	Chr1	28505856	28505861	5	OsKitaake01g276600
Deletion	Chr3	29348929	29348942	13	OsKitaake03g306000
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	799700	871707
Inversion	Chr8	815755	871713
Inversion	Chr10	12615059	13577100	2
Inversion	Chr10	12615068	13577112	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes