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Mutant Information

Mutant Name	FN3521-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3521-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	6244146	G-A	Hetero	INTRON
SBS	Chr1	13252994	T-A	Hetero	INTERGENIC
SBS	Chr1	17479849	G-A	Hetero	INTERGENIC
SBS	Chr1	28629680	C-T	Hetero	INTERGENIC
SBS	Chr1	28961260	G-T	Hetero	INTERGENIC
SBS	Chr1	34941808	G-A	Hetero	INTERGENIC
SBS	Chr1	43676757	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	5688578	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	19872628	A-C	Hetero	INTRON
SBS	Chr2	24286802	G-A	Homo	INTERGENIC
SBS	Chr3	4815404	C-T	Hetero	INTERGENIC
SBS	Chr3	20159300	C-T	Homo	INTERGENIC
SBS	Chr4	26247419	C-T	Hetero	INTRON
SBS	Chr5	9213880	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	9265484	A-T	Hetero	INTERGENIC
SBS	Chr5	19188595	C-T	Hetero	INTERGENIC
SBS	Chr6	10692410	C-T	Homo	INTERGENIC
SBS	Chr6	12045057	T-A	Hetero	INTERGENIC
SBS	Chr7	3875472	G-A	Hetero	INTERGENIC
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	8285224	T-C	Homo	INTERGENIC
SBS	Chr8	18874599	C-T	Hetero	INTRON
SBS	Chr8	19376978	G-A	Hetero	INTERGENIC
SBS	Chr8	19584764	A-G	Hetero	INTERGENIC
SBS	Chr9	7641517	C-A	Hetero	INTERGENIC
SBS	Chr10	437001	C-G	Hetero	INTERGENIC
SBS	Chr10	7076908	G-A	Hetero	INTERGENIC
SBS	Chr10	20914388	G-C	Hetero	INTERGENIC
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr11	8995665	A-G	Hetero	INTERGENIC
SBS	Chr11	15076931	C-T	Hetero	START_GAINED

Deletions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	12456290	12456291	1
Deletion	Chr10	16862993	16862996	3
Deletion	Chr6	19474967	19474973	6
Deletion	Chr8	23537109	23537111	2
Deletion	Chr11	24526797	24526801	4
Deletion	Chr5	26063413	26063415	2
Deletion	Chr2	34030771	34030772	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	13053394	13053399	4
Insertion	Chr6	7662205	7662208	2
Insertion	Chr7	4689457	4689460	2
Insertion	Chr8	16521293	16521296	2
Insertion	Chr12	9672868	9672871	2
Insertion	Chr3	26723736	26723738	1
Insertion	Chr7	14345184	14345186	1

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3441642	Chr3	5481806	OsKitaake03g077800
Translocation	Chr8	3442015	Chr3	5481812	OsKitaake03g077800
Translocation	Chr8	3442032	Chr4	29362917	OsKitaake04g223900
Translocation	Chr8	5468599	Chr4	25028121
Translocation	Chr10	8673293	Chr8	6126397
Translocation	Chr10	8674879	Chr8	3707120
Translocation	Chr9	15703169	Chr4	29361590	OsKitaake04g223800
Translocation	Chr6	21547768	Chr4	25266630
Translocation	Chr6	21551067	Chr4	25266783