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| Mutant Information |
|---|
| Mutant Name | FN3522-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3522-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1783658 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27729695 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28407828 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33083071 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 2333853 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 14582943 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21265727 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22065006 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 31778234 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 32203993 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 21576914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31915429 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 32163687 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 24656934 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26463571 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26484990 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 27207881 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 21763682 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7838220 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21857364 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23710748 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7279266 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 1229014 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 15207363 | A-C | Hetero | INTRON | |
| SBS | Chr10 | 19610262 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 8078043 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 27948783 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28698541 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4362813 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 4566623 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 8703298 | C-A | Hetero | INTRON | |
| SBS | Chr12 | 15119648 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19239564 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 21096436 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21096437 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23552575 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 513028 | 513030 | 2 | |
| Deletion | Chr4 | 5401212 | 5401213 | 1 | |
| Deletion | Chr4 | 8633321 | 8633332 | 11 | OsKitaake04g044000 |
| Deletion | Chr10 | 11712941 | 11712942 | 1 | |
| Deletion | Chr11 | 13789836 | 13789837 | 1 | |
| Deletion | Chr4 | 17606639 | 17606644 | 5 | |
| Deletion | Chr12 | 18907413 | 18907414 | 1 | |
| Deletion | Chr11 | 23757514 | 23757531 | 17 | |
| Deletion | Chr6 | 28403641 | 28403662 | 21 | |
| Deletion | Chr3 | 36852396 | 36852400 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 33634317 | 33634320 | 2 | |
| Insertion | Chr5 | 8019107 | 8019110 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 18634628 | 19367699 | OsKitaake11g150900 |
| Inversion | Chr2 | 33115921 | 33573227 | 2 |
| Inversion | Chr2 | 33115926 | 33573227 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 993942 | Chr1 | 21582781 | OsKitaake01g208000 |