Search Kitaake

Mutant Information

Mutant Name	FN3523-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3523-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2233517 T-C Hetero INTERGENIC
SBS Chr1 9756589 C-A Homo INTERGENIC
SBS Chr1 23206760 G-C Hetero INTERGENIC
SBS Chr2 20532070 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g199800
SBS Chr2 35769661 G-A Hetero INTRON
SBS Chr3 11863694 C-T Hetero INTERGENIC
SBS Chr3 31017950 A-T Hetero INTRON
SBS Chr4 7286652 G-A Hetero INTERGENIC
SBS Chr6 10901150 T-G Hetero SPLICE_SITE_REGION
SBS Chr6 15229011 T-C Hetero INTERGENIC
SBS Chr6 17407868 G-A Homo INTERGENIC
SBS Chr6 26569755 T-C Hetero INTERGENIC
SBS Chr7 14504848 G-A Homo INTERGENIC
SBS Chr7 22961759 T-A Hetero UTR_3_PRIME
SBS Chr7 22961760 C-A Hetero UTR_3_PRIME
SBS Chr8 792223 A-G Hetero INTERGENIC
SBS Chr8 21002408 G-A Homo INTERGENIC
SBS Chr8 28070292 C-A Hetero INTERGENIC
SBS Chr9 5025920 G-T Homo INTERGENIC
SBS Chr10 10626376 G-A Hetero INTERGENIC
SBS Chr10 16840888 G-A Hetero INTERGENIC
SBS Chr10 16840899 G-A Hetero INTERGENIC
SBS Chr10 23575335 C-T Homo INTERGENIC
SBS Chr11 10353422 G-A Hetero INTERGENIC
SBS Chr11 15475202 C-G Homo INTERGENIC
SBS Chr11 18955174 A-G Hetero INTERGENIC
SBS Chr11 20873079 C-T Hetero INTERGENIC
SBS Chr12 4467205 C-G Hetero INTERGENIC
SBS Chr12 7116563 A-T Hetero INTERGENIC
SBS Chr12 7912238 C-T Hetero INTERGENIC
SBS Chr12 8052705 C-G Hetero INTERGENIC
SBS Chr12 11420550 T-A Hetero INTERGENIC
SBS Chr12 17457918 A-T Hetero INTERGENIC
SBS Chr12 19032381 C-G Hetero INTRON
SBS Chr12 25300312 G-A Hetero SYNONYMOUS_CODING

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 858638 858640 2
Deletion Chr9 1894406 1894408 2
Deletion Chr1 2060001 2129000 68999 11
Deletion Chr1 6517525 6517533 8
Deletion Chr8 16681311 16681312 1
Deletion Chr6 19944235 19944237 2
Deletion Chr6 20288107 20288108 1 OsKitaake06g181200
Deletion Chr12 22902534 22902535 1
Deletion Chr1 23118426 23118431 5
Deletion Chr10 23233695 23233709 14
Deletion Chr5 23975758 23975763 5
Deletion Chr11 24222369 24222370 1
Deletion Chr12 25366931 25366943 12
Deletion Chr11 25413344 25413347 3 OsKitaake11g204400
Deletion Chr11 27567694 27567700 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35867088 35867091 2
Insertion Chr3 10784141 10784145 3
Insertion Chr10 18689207 18689213 5
Insertion Chr11 27094236 27094239 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 699672 924847 OsKitaake10g004800
Inversion Chr10 699673 925193 OsKitaake10g004800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2233517	T-C	Hetero	INTERGENIC
SBS	Chr1	9756589	C-A	Homo	INTERGENIC
SBS	Chr1	23206760	G-C	Hetero	INTERGENIC
SBS	Chr2	20532070	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g199800
SBS	Chr2	35769661	G-A	Hetero	INTRON
SBS	Chr3	11863694	C-T	Hetero	INTERGENIC
SBS	Chr3	31017950	A-T	Hetero	INTRON
SBS	Chr4	7286652	G-A	Hetero	INTERGENIC
SBS	Chr6	10901150	T-G	Hetero	SPLICE_SITE_REGION
SBS	Chr6	15229011	T-C	Hetero	INTERGENIC
SBS	Chr6	17407868	G-A	Homo	INTERGENIC
SBS	Chr6	26569755	T-C	Hetero	INTERGENIC
SBS	Chr7	14504848	G-A	Homo	INTERGENIC
SBS	Chr7	22961759	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	22961760	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	792223	A-G	Hetero	INTERGENIC
SBS	Chr8	21002408	G-A	Homo	INTERGENIC
SBS	Chr8	28070292	C-A	Hetero	INTERGENIC
SBS	Chr9	5025920	G-T	Homo	INTERGENIC
SBS	Chr10	10626376	G-A	Hetero	INTERGENIC
SBS	Chr10	16840888	G-A	Hetero	INTERGENIC
SBS	Chr10	16840899	G-A	Hetero	INTERGENIC
SBS	Chr10	23575335	C-T	Homo	INTERGENIC
SBS	Chr11	10353422	G-A	Hetero	INTERGENIC
SBS	Chr11	15475202	C-G	Homo	INTERGENIC
SBS	Chr11	18955174	A-G	Hetero	INTERGENIC
SBS	Chr11	20873079	C-T	Hetero	INTERGENIC
SBS	Chr12	4467205	C-G	Hetero	INTERGENIC
SBS	Chr12	7116563	A-T	Hetero	INTERGENIC
SBS	Chr12	7912238	C-T	Hetero	INTERGENIC
SBS	Chr12	8052705	C-G	Hetero	INTERGENIC
SBS	Chr12	11420550	T-A	Hetero	INTERGENIC
SBS	Chr12	17457918	A-T	Hetero	INTERGENIC
SBS	Chr12	19032381	C-G	Hetero	INTRON
SBS	Chr12	25300312	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	858638	858640	2
Deletion	Chr9	1894406	1894408	2
Deletion	Chr1	2060001	2129000	68999	11
Deletion	Chr1	6517525	6517533	8
Deletion	Chr8	16681311	16681312	1
Deletion	Chr6	19944235	19944237	2
Deletion	Chr6	20288107	20288108	1	OsKitaake06g181200
Deletion	Chr12	22902534	22902535	1
Deletion	Chr1	23118426	23118431	5
Deletion	Chr10	23233695	23233709	14
Deletion	Chr5	23975758	23975763	5
Deletion	Chr11	24222369	24222370	1
Deletion	Chr12	25366931	25366943	12
Deletion	Chr11	25413344	25413347	3	OsKitaake11g204400
Deletion	Chr11	27567694	27567700	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	699672	924847	OsKitaake10g004800
Inversion	Chr10	699673	925193	OsKitaake10g004800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes