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Mutant Information

Mutant Name	FN3524-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3524-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 986069 T-C Hetero INTRON
SBS Chr1 10570988 G-A Hetero INTERGENIC
SBS Chr1 10570990 T-A Hetero INTERGENIC
SBS Chr1 11932425 C-T Hetero INTERGENIC
SBS Chr2 14729678 G-A Homo INTERGENIC
SBS Chr2 15272505 A-G Hetero INTERGENIC
SBS Chr2 15385819 C-T Hetero INTERGENIC
SBS Chr2 22365153 C-T Homo INTERGENIC
SBS Chr3 12007045 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g163300
SBS Chr4 31995105 T-A Hetero UTR_3_PRIME
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr4 33210370 A-G Homo INTERGENIC
SBS Chr5 18574711 C-T Homo INTERGENIC
SBS Chr5 22153381 C-T Hetero INTERGENIC
SBS Chr7 8723790 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g092700
SBS Chr7 9381537 T-C Hetero INTERGENIC
SBS Chr8 13338487 G-A Hetero INTRON
SBS Chr8 19237672 C-T Homo INTERGENIC
SBS Chr9 234622 A-G Hetero INTERGENIC
SBS Chr9 13829758 G-A Hetero INTERGENIC
SBS Chr10 2593780 C-T Hetero INTERGENIC
SBS Chr10 17691638 C-T Homo INTERGENIC
SBS Chr11 7286328 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g082900
SBS Chr11 8364997 G-A Homo INTERGENIC
SBS Chr11 22426787 A-G Hetero INTERGENIC
SBS Chr12 9065855 C-A Hetero INTERGENIC
SBS Chr12 9647748 G-T Hetero INTRON
SBS Chr12 13294667 A-G Hetero INTERGENIC
SBS Chr12 25326518 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 56230 56232 2
Deletion Chr9 2490511 2490515 4
Deletion Chr8 8263624 8263631 7
Deletion Chr4 8418457 8418469 12
Deletion Chr4 9337175 9337176 1
Deletion Chr10 11010258 11010260 2
Deletion Chr11 11588480 11588482 2
Deletion Chr10 12983639 12983640 1
Deletion Chr10 13350001 13363000 12999
Deletion Chr11 13817748 13817750 2
Deletion Chr5 16467068 16467085 17
Deletion Chr3 19271001 19289000 17999
Deletion Chr5 19961129 19961134 5
Deletion Chr4 20667210 20667212 2
Deletion Chr11 24082679 24082681 2
Deletion Chr2 31586682 31586691 9
Deletion Chr3 33330568 33330572 4
Deletion Chr4 34844676 34844685 9 OsKitaake04g291550
Deletion Chr3 37744950 37744951 1 OsKitaake03g424100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8980457 8980460 2
Insertion Chr7 13607843 13607849 5

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 1409665 1946295
Inversion Chr11 1409673 1946295
Inversion Chr10 12461290 13395330
Inversion Chr10 12461292 12877046
Inversion Chr10 13363275 13395329
Inversion Chr8 19311883 19312984
Inversion Chr4 29275121 29395425
Inversion Chr4 29275132 29395431

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13264828 Chr3 19290475
Translocation Chr8 19337000 Chr5 10600038 OsKitaake05g091300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	986069	T-C	Hetero	INTRON
SBS	Chr1	10570988	G-A	Hetero	INTERGENIC
SBS	Chr1	10570990	T-A	Hetero	INTERGENIC
SBS	Chr1	11932425	C-T	Hetero	INTERGENIC
SBS	Chr2	14729678	G-A	Homo	INTERGENIC
SBS	Chr2	15272505	A-G	Hetero	INTERGENIC
SBS	Chr2	15385819	C-T	Hetero	INTERGENIC
SBS	Chr2	22365153	C-T	Homo	INTERGENIC
SBS	Chr3	12007045	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g163300
SBS	Chr4	31995105	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr4	33210370	A-G	Homo	INTERGENIC
SBS	Chr5	18574711	C-T	Homo	INTERGENIC
SBS	Chr5	22153381	C-T	Hetero	INTERGENIC
SBS	Chr7	8723790	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g092700
SBS	Chr7	9381537	T-C	Hetero	INTERGENIC
SBS	Chr8	13338487	G-A	Hetero	INTRON
SBS	Chr8	19237672	C-T	Homo	INTERGENIC
SBS	Chr9	234622	A-G	Hetero	INTERGENIC
SBS	Chr9	13829758	G-A	Hetero	INTERGENIC
SBS	Chr10	2593780	C-T	Hetero	INTERGENIC
SBS	Chr10	17691638	C-T	Homo	INTERGENIC
SBS	Chr11	7286328	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g082900
SBS	Chr11	8364997	G-A	Homo	INTERGENIC
SBS	Chr11	22426787	A-G	Hetero	INTERGENIC
SBS	Chr12	9065855	C-A	Hetero	INTERGENIC
SBS	Chr12	9647748	G-T	Hetero	INTRON
SBS	Chr12	13294667	A-G	Hetero	INTERGENIC
SBS	Chr12	25326518	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	56230	56232	2
Deletion	Chr9	2490511	2490515	4
Deletion	Chr8	8263624	8263631	7
Deletion	Chr4	8418457	8418469	12
Deletion	Chr4	9337175	9337176	1
Deletion	Chr10	11010258	11010260	2
Deletion	Chr11	11588480	11588482	2
Deletion	Chr10	12983639	12983640	1
Deletion	Chr10	13350001	13363000	12999
Deletion	Chr11	13817748	13817750	2
Deletion	Chr5	16467068	16467085	17
Deletion	Chr3	19271001	19289000	17999
Deletion	Chr5	19961129	19961134	5
Deletion	Chr4	20667210	20667212	2
Deletion	Chr11	24082679	24082681	2
Deletion	Chr2	31586682	31586691	9
Deletion	Chr3	33330568	33330572	4
Deletion	Chr4	34844676	34844685	9	OsKitaake04g291550
Deletion	Chr3	37744950	37744951	1	OsKitaake03g424100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1409665	1946295
Inversion	Chr11	1409673	1946295
Inversion	Chr10	12461290	13395330
Inversion	Chr10	12461292	12877046
Inversion	Chr10	13363275	13395329
Inversion	Chr8	19311883	19312984
Inversion	Chr4	29275121	29395425
Inversion	Chr4	29275132	29395431

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes