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Mutant Information

Mutant Name	FN3525-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3525-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 8375723 G-T Hetero INTERGENIC
SBS Chr3 4507390 G-T Hetero INTERGENIC
SBS Chr3 30823878 C-G Homo INTRON
SBS Chr3 35702693 G-A Homo INTERGENIC
SBS Chr4 3517349 T-C Hetero INTERGENIC
SBS Chr4 24356153 C-A Hetero INTERGENIC
SBS Chr4 25176468 T-G Homo INTERGENIC
SBS Chr4 29208872 A-G Hetero INTRON
SBS Chr5 8389731 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g081600
SBS Chr6 24420223 T-C Hetero INTERGENIC
SBS Chr6 25023117 C-T Hetero INTERGENIC
SBS Chr6 29237912 T-A Hetero INTERGENIC
SBS Chr7 8831244 C-T Hetero INTERGENIC
SBS Chr7 25564021 T-A Hetero INTRON
SBS Chr8 769662 C-T Hetero INTERGENIC
SBS Chr8 1717607 T-C Hetero INTERGENIC
SBS Chr8 12606963 C-T Hetero INTERGENIC
SBS Chr8 16742296 C-T Homo INTERGENIC
SBS Chr9 3679776 G-A Homo INTERGENIC
SBS Chr9 12940579 C-A Hetero INTERGENIC
SBS Chr10 4592222 C-T Hetero INTERGENIC
SBS Chr10 16745197 A-G Homo INTERGENIC
SBS Chr11 1104460 C-T Homo INTERGENIC
SBS Chr11 1606728 G-A Homo INTRON
SBS Chr11 1606729 T-A Homo INTRON
SBS Chr11 2704444 G-A Hetero UTR_3_PRIME
SBS Chr11 6746314 C-T Hetero INTERGENIC
SBS Chr12 8368551 A-T Hetero INTERGENIC
SBS Chr12 15007320 G-A Hetero INTERGENIC
SBS Chr12 23451109 C-A Hetero INTERGENIC
SBS Chr12 24614097 T-C Hetero INTRON

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1778458 1778459 1
Deletion Chr5 6551269 6551276 7
Deletion Chr4 7259001 7350000 90999 4
Deletion Chr5 15189795 15189796 1
Deletion Chr3 18205166 18205177 11
Deletion Chr3 29053880 29053887 7

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 2510172 2510174 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 20030631 20074169
Inversion Chr3 33287492 33326110 OsKitaake03g356100
Inversion Chr3 33287500 33326140 OsKitaake03g356100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	8375723	G-T	Hetero	INTERGENIC
SBS	Chr3	4507390	G-T	Hetero	INTERGENIC
SBS	Chr3	30823878	C-G	Homo	INTRON
SBS	Chr3	35702693	G-A	Homo	INTERGENIC
SBS	Chr4	3517349	T-C	Hetero	INTERGENIC
SBS	Chr4	24356153	C-A	Hetero	INTERGENIC
SBS	Chr4	25176468	T-G	Homo	INTERGENIC
SBS	Chr4	29208872	A-G	Hetero	INTRON
SBS	Chr5	8389731	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g081600
SBS	Chr6	24420223	T-C	Hetero	INTERGENIC
SBS	Chr6	25023117	C-T	Hetero	INTERGENIC
SBS	Chr6	29237912	T-A	Hetero	INTERGENIC
SBS	Chr7	8831244	C-T	Hetero	INTERGENIC
SBS	Chr7	25564021	T-A	Hetero	INTRON
SBS	Chr8	769662	C-T	Hetero	INTERGENIC
SBS	Chr8	1717607	T-C	Hetero	INTERGENIC
SBS	Chr8	12606963	C-T	Hetero	INTERGENIC
SBS	Chr8	16742296	C-T	Homo	INTERGENIC
SBS	Chr9	3679776	G-A	Homo	INTERGENIC
SBS	Chr9	12940579	C-A	Hetero	INTERGENIC
SBS	Chr10	4592222	C-T	Hetero	INTERGENIC
SBS	Chr10	16745197	A-G	Homo	INTERGENIC
SBS	Chr11	1104460	C-T	Homo	INTERGENIC
SBS	Chr11	1606728	G-A	Homo	INTRON
SBS	Chr11	1606729	T-A	Homo	INTRON
SBS	Chr11	2704444	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	6746314	C-T	Hetero	INTERGENIC
SBS	Chr12	8368551	A-T	Hetero	INTERGENIC
SBS	Chr12	15007320	G-A	Hetero	INTERGENIC
SBS	Chr12	23451109	C-A	Hetero	INTERGENIC
SBS	Chr12	24614097	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1778458	1778459	1
Deletion	Chr5	6551269	6551276	7
Deletion	Chr4	7259001	7350000	90999	4
Deletion	Chr5	15189795	15189796	1
Deletion	Chr3	18205166	18205177	11
Deletion	Chr3	29053880	29053887	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	20030631	20074169
Inversion	Chr3	33287492	33326110	OsKitaake03g356100
Inversion	Chr3	33287500	33326140	OsKitaake03g356100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes