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Mutant Information

Mutant Name	FN3526-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3526-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	537094	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	23124776	C-T	Homo	INTERGENIC
SBS	Chr2	96716	C-T	Homo	INTRON
SBS	Chr2	4569460	C-T	Hetero	INTERGENIC
SBS	Chr2	8203934	C-T	Hetero	INTERGENIC
SBS	Chr2	34954773	G-A	Hetero	INTRON
SBS	Chr3	8899459	G-C	Homo	INTERGENIC
SBS	Chr3	12540329	T-A	Hetero	INTERGENIC
SBS	Chr3	24614661	T-A	Hetero	INTERGENIC
SBS	Chr3	25691256	G-T	Hetero	INTRON
SBS	Chr3	31315975	G-A	Hetero	INTRON
SBS	Chr4	7242894	A-C	Homo	INTERGENIC
SBS	Chr5	10558060	G-A	Homo	INTERGENIC
SBS	Chr5	11556999	G-C	Homo	INTERGENIC
SBS	Chr5	12814375	T-C	Homo	INTERGENIC
SBS	Chr5	18103229	T-C	Homo	INTERGENIC
SBS	Chr5	29033166	G-A	Hetero	INTERGENIC
SBS	Chr5	30135290	C-T	Hetero	INTERGENIC
SBS	Chr6	16123932	C-T	Hetero	INTERGENIC
SBS	Chr6	25857843	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	26831433	C-T	Hetero	INTERGENIC
SBS	Chr7	6619385	C-T	Hetero	INTERGENIC
SBS	Chr8	13302248	T-C	Hetero	INTERGENIC
SBS	Chr8	13302249	C-T	Hetero	INTERGENIC
SBS	Chr8	28379103	C-T	Homo	INTRON
SBS	Chr9	10374880	G-C	Homo	INTERGENIC
SBS	Chr9	20364222	C-T	Hetero	INTERGENIC
SBS	Chr10	134801	G-A	Hetero	INTERGENIC
SBS	Chr11	12594539	G-A	Homo	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	549710	549711	1
Deletion	Chr11	2091230	2091236	6
Deletion	Chr8	2234815	2234826	11
Deletion	Chr5	3342042	3342044	2
Deletion	Chr6	6147001	6260000	112999	10
Deletion	Chr2	9565289	9565292	3
Deletion	Chr5	11610083	11610095	12
Deletion	Chr3	12974359	12974361	2
Deletion	Chr4	18119914	18119915	1
Deletion	Chr1	18446124	18446129	5
Deletion	Chr11	18992392	18992394	2
Deletion	Chr8	20758107	20758109	2
Deletion	Chr12	20926179	20926191	12
Deletion	Chr1	21027083	21027090	7
Deletion	Chr1	22755117	22755121	4
Deletion	Chr5	23957611	23957612	1
Deletion	Chr8	25799358	25799359	1
Deletion	Chr3	28088278	28088286	8
Deletion	Chr2	29799709	29799713	4
Deletion	Chr4	30500001	30648000	147999	10
Deletion	Chr3	37566606	37566609	3	OsKitaake03g421700

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	23969223	23969228	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6854528	7069717	2
Inversion	Chr12	6854575	7069728	2